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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcattttctctgtgattccccatcacatataacttcagagttccctctttgattttcatctaggaaattaatccgaacattttgctccctaatttcagGTTAAGGAGATCTTCCCATTGGGTTTTTACAGCTTGCTTGTGGTGCCTCCAATGTTGGCAATGATGAATTTGTTTTGGTTCTGGAAAATTGCCAAGGGTT

Basic information

species Glycine max
transcript GLYMA11G31750.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G31750.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g08450.t01 (Vitis vinifera), 3'ss of exon 8
gcaagcattttctctgtgattccccatcacatataacttcagagttccctctttgattttca---tctaggaaattaatccgaacattttgctccctaatttcagGTTAAGGAGATCTTCCCATTGGGTTTTTACAGCTTGCTTGTGGTGCCTCCAATGTTGGCAATGATGAATTTGTTTTGGTTCTGGAAAATTGCCAAGGGTT
     ||| ||   |||||| ||  ||    ||  |   || | ||||    | ||| ||     || |   || | |||  ||    | ||||  |    |||||| ||| | || || || ||||| || |||||||||||  ||||||||||  || ||||||||||||||   |||||||| ||||||||||| |||||||
---gacatgtttggtgtgatacctaattg-gtaccatagcata-ttccaaactggatattgtggctcaactcaaatgatctcaatccctcgctctttctcatcagGTGAAGAAAATATTTCCCTTGGGGTTCTACAGCTTGCTGATGGTGCCTCCTGTGCTGGCAATGATGAATGCATTTTGGTTTTGGAAAATTGCAAAGGGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294239|gb|FG986328.1|FG986328
EST:     TTTTCCTATTCATGTTCTTTTTTATCCACATGTGGACCCATTTTGACGAG                         GTTAAGGAGATCTTCCCATTGGGTTTTTACAGCTTGCTTGTGGTGCCTCCA
genomic: TTTTCCTATTCATGTTCTTTTTTATCCACATGTGGACCCATTTTGACGAGgcaagcattt ... ctaatttcagGTTAAGGAGATCTTCCCATTGGGTTTTTACAGCTTGCTTGTGGTGCCTCCA
EST: gi|20811415|gb|BQ295893.1|BQ295893
EST:     TTTCCTATTCATGTTCTTTTTAATCCACATGGTGGACCCATTTTGACGAG                         GTTAAGGAGATCTTCCCATTGGGTTTTTACAGCTTGCTTGTGGTGCCTCCA
genomic: TTTCCTATTCATGTTCTTTTTTATCCACAT-GTGGACCCATTTTGACGAGgcaagcattt ... ctaatttcagGTTAAGGAGATCTTCCCATTGGGTTTTTACAGCTTGCTTGTGGTGCCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctctttgattttcatctaggaaattaatccgaacattttgctccctaatttcagGTTAAGGAGATCTTCCCATTGGGTTTTTACAGCTTGCTTGTGGTGCCTCCAATGTTGGCAATGATGAATTTGTTTTGGTTCTGGAAAATTGCCAAGGGTT
                                           ccctaat  putative branch site (score: 3)
                                    ttttgctccct  CT-rich tract
                     aaattaat  TA-rich tract