1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtgtttcttcaagttagagtttaaatttcatctgcttatagtttaaaacaatatattatcagtaaatatcaagtaacaagtaacaatctttaccagagtaattaagatatcttatcagctgtaattttttataagTTAGGTGGTATCTGCATGGCATGTTCACTGACAACATTGGCGCATATCCGACAACTAATTGAATTTAAATATTCATGGAAACTCCTGGACATTTTTCCTG
species | Glycine max |
transcript | GLYMA11G30030.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGTCAAAACCTTTTTACCAGTGTATGGAGTATGACATGAAACAGTG TTAGGTGGTATCTGCATGGCATGTTCACTGACAACATTGGCGCATATCCGAEST: gi|213594113|gb|DB981413.1|DB981413
genomic: ACTTTGTCAAAACCTTTTTACCAGTGTATGGAGTATGACATGAAACAGTGgtaagtgttt ... tttttataagTTAGGTGGTATCTGCATGGCATGTTCACTGACAACATTGGCGCATATCCGA
EST: CTTTTTACCAGTGTATGGAGTATGACATGAAACA--G -T-GGTGGTATCTGCATGGCATGTTCACTGACAACATTGGTGCATATCCGA
genomic: CTTTTTACCAGTGTATGGAGTATGACATGAAACAGTGgtaagtgttt ... tttttataagTTAGGTGGTATCTGCATGGCATGTTCACTGACAACATTGGCGCATATCCGA
taacaatctttaccagagtaattaagatatcttatcagctgtaattttttataagTTAGGTGGTATCTGCATGGCATGTTCACTGACAACATTGGCGCATATCCGACAACTAATTGAATTTAAATATTCATGGAAACTCCTGGACATTTTTCCTG
aagtaac putative branch site (score: 2)
ttttttat putative PPT
taattaagatatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtttcttcaagttagagtttaaatttcatctgcttatagtttaaaacaatatattatcagtaaatatcaagtaacaagtaacaatctttaccagagtaattaagatatcttatcagctgtaattttttataagTTAGGTGGTATCTGCATGGCATGTTCACTGACAACATTGGCGCATATCCGACAACTAATTGAATTTAAATATTCATGGAAACTCCTGGACATTTTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA