Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgttgtatgggatggatttgcaattcacaattttgcatctacttattatagtctatagaataacttactattttattgcagTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACA

Basic information

species Glycine max
transcript GLYMA11G18930.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G141735_T01 (Zea mays), 3'ss of exon 8
gtaagtgtgttgtatgggatggatttgcaattcacaattttgcatctacttattat-agtctatagaataacttactattttattgcagTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACA
||||||   |  | |   ||  || | || || | |   | | || ||  |||    ||| | ||    |       ||  |  | |||||||| || ||||| || || || || ||||||||||| ||||||||||| || |||||||| | ||| || ||||| || ||||||| |||||   | |
gtaagtagttaatct---attcatgttcacttta-atcctagtatatatgtatagccagtttgtaatgcattc----atccttctacagTATGGGCATTTCTTCCCTGACCCTCAATATGAAAATGTGCAACACATCATCTGCTGTGATTCATTTGCCACTTATGCATATGACTTTGAGTTTGCCCATA

upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G27460.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtgtgttgtatggga--tggatttgcaattcacaattttgcatctacttattatagtctatagaataacttacta--ttttattgcagTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACA
||| |||  ||   ||  |   | |  | ||  | |  |||||   | |  || || |  |   |    ||||    ||   ||  ||||||| ||||||||||||||||||||||||||| || ||  |||| || ||||| || |||||||| ||||| |||||||| || |||||||  ||||   | |
gtatgtggttttagtgaaaaccgaaagttcagataatgattttttttttttttttttttttgcttcagctaacagtttagccttacttgcagTTTGGTCACTTCTTTCCAGATCCACAGTACGAGAACCTTCAGCATATCATCTGCTGTGATTCATATGCAACATATGCATATGACTTTGAATTTGCAGATA

upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0080g00510.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtgtgttgtatgggatggatttgcaat-tcacaattttgcatctacttattatagtctatagaataacttac--tattttattgcagTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACA
|| ||||  |  |||    |   ||   | | ||| |  | ||  |  ||||  | || | || |     ||||||  ||  || |||||||||||||| ||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||  |||||||| ||||| ||||  ||||  ||||
gtgagtg-atcatatcatgtcctttaagattgtcatagctgtgt-tacactttgtttattttacatttacacttacattaaatttttgcagTATGGTCATTTCTTCCCAGATCCACAGTACGAAAATGTGCAACACATTATTTGTTGTGATTCTTATGTCACATATGCCTACGATTTTGATTTTGCCAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18712711|gb|BM522679.1|BM522679
EST:     GTTGTGTCCTGCGGTTAAGAACCTCGACTGAATTTAAACCTGGCAATTCT                         TATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATA
genomic: GTTGTGTCCTGCGGTTAAGAACCTCGACTGAATTTAAACCTGGCAATTCTgtaagtgtgt ... tttattgcagTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaattttgcatctacttattatagtctatagaataacttactattttattgcagTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACATATGCTTACGACTTTGTGTTTGAGAACA
                                   aacttac  putative branch site (score: 2)
                                         ctatttt  CT-rich tract
                ttattatagtctatag  TA-rich tract