Sequence
atgc intronic sequence ATGC exonic sequence...gaagtaatttttcttatactttgctgatatattaactggtgacaacactagtaccttaaagttccttatcattgtcatttcctctgattttattctgcagGTTTGGCATGTTGCTGATGTTCCCCAGAATGACAAATTTCAGTATACACATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAAAAAGTTGTTGG
Basic information
species | Glycine max |
transcript | GLYMA11G14770.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G14770.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 3'ss of exon 8
---------------------------------------------gaagtaatttttcttatactttgctgatatat-taactggtgac-aacactagt--accttaaag---ttccttatcattgtcatttcctctgattttattctgcagGTTTGGCATGTTGCTGATGTTCCCCAGAATGACAAATTTCAGTATACACATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAAAAAGTTGTTGG
| | | | ||||||||||| | | | || |||| |||| | | || || || || ||||| ||||| || | | || | |||| ||||| |||||| | |||||||| ||| | || ||||| |||||||| || || |||||||| || ||||||||||| ||||| || ||| ||| | ||||
gtatgtcgtttcttttccgttttacatttttactggcctttgctagggttctgtgtgattatactttgcaaccttgggttattgttgaccaacattgtttgactttttagcggttgcttatgcttgtcgttggtttttcttgttttcttcagGTGTGGCATTTGGCTGATGTCCCCAAAAACGACAACTTTCAGTACACTCACTTTGCTCACAAGATAAACAGCTTCGACACAGCGCCTGCTAAGCTCTTGG
upper sequence: GLYMA11G14770.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g04930.t01 (Vitis vinifera), 3'ss of exon 8
gaagtaattttt--cttatactttgctgatatattaactggtgacaacacta-gtaccttaaagttccttatcattgtcatttcctctgattttattctgcagGTTTGGCATGTTGCTGATGTTCCCCAGAATGACAAATTTCAGTATACACATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAAAAAGTTGTTGG
| | | || | || | ||||||||| | | ||| | | || |||| || | || || || | | || |||| | |||||||||||||||||||||||||||| || |||||||||||||| || |||||||| ||||||||||||||||||||||| || |||| ||||||||||
--acttgtcattagcacatgcattgctgatacttgagctg-taaaaagactatgtgctgataaattgtcaattgatcactgcgttattgcttttctgttgcagGTTTGGCATGTTGCTGATGTTCCTGAGGGCGACAAATTTCAGTACACTCATTTTGCACATAAAATAAACAGCTTTGACACAGCTCCTAGGAAGTTGTTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cactagtaccttaaagttccttatcattgtcatttcctctgattttattctgcagGTTTGGCATGTTGCTGATGTTCCCCAGAATGACAAATTTCAGTATACACATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAAAAAGTTGTTGG
ctctgat putative branch site (score: 4)
tttcctctgatttt CT-rich tract
tgattttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaagtaatttttcttatactttgctgatatattaactggtgacaacactagtaccttaaagttccttatcattgtcatttcctctgattttattctgcagGTTTGGCATGTTGCTGATGTTCCCCAGAATGACAAATTTCAGTATACACATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAAAAAGTTGTTGG
- - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - tggtgac
- - - - - - - - - - - - - - - - - - - - - - - - - gtacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcctt