1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagatttacattagacttggtttggcttgacaattatatttaatgggttgtgtgtgtactctatcttgttgctagtatgtgggtggtagataattgtctgtctgctgttttttcaatgagtagatgccgggagagattccctctaacaatccctttacatcttgtttttattttcttaaaaaataaaatcagGTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAG
species | Glycine max |
transcript | GLYMA11G14760.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAG GTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATAEST: gi|208086491|gb|GD879805.1|GD879805
genomic: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagattta ... ataaaatcagGTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATA
EST: TTGAAAAACTAGGAACTGGAAG GTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATAEST: gi|298175971|gb|HO015376.1|HO015376
genomic: TTGAAAAACTAGGAACTGGAAGgtaagattta ... ataaaatcagGTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATA
EST: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAG GTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAAGCATCGGACATAEST: gi|31472749|gb|CD414777.1|CD414777
genomic: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagattta ... ataaaatcagGTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATA
EST: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAG GTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATAEST: gi|7591157|gb|AW706896.1|AW706896
genomic: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagattta ... ataaaatcagGTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATA
EST: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGANAAACTANGAACTGGAAG GTGGCGTGATGTTAAGCTTEST: gi|51337741|gb|CO981607.1|CO981607
genomic: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagattta ... ataaaatcagGTGGCGTGATGTTAAGCTT
EST: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAG GTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATA
genomic: GATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGgtaagattta ... ataaaatcagGTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATA
tccctctaacaatccctttacatcttgtttttattttcttaaaaaataaaatcagGTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAG
ctctaac putative branch site (score: 2)
tttacatcttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatttacattagacttggtttggcttgacaattatatttaatgggttgtgtgtgtactctatcttgttgctagtatgtgggtggtagataattgtctgtctgctgttttttcaatgagtagatgccgggagagattccctctaacaatccctttacatcttgtttttattttcttaaaaaataaaatcagGTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG