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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taacaacttaatacagtacttactaaagcagtaaatggtggtgattatattacctcgtataaatcataaatgactaattcacttctttctttttatccagTTTCATGCAAACTGCATTGATCCATGGCTCCGACAACAAGGAACATGTCCTGTGTGCAAATTAAGGATAGGGTCGGTAAGTGGGGGAAACAGGGAAAGCG

Basic information

species Glycine max
transcript GLYMA11G14590.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14590.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os03g16570.3 (Oryza sativa), 3'ss of exon 8
taacaacttaatacagtacttactaaagcagtaaatggtggtgattatattacctcgtataaatcataaatgactaattcacttcttt-----ctttttatccagTTTCATGCAAACTGCATTGATCCATGGCTCCGACAACAAGGAACATGTCCTGTGTGCAAATTAAGGATAGGGTCGGTAAGTGG-GGGAAACAGGGAAAGCG-
       ||    |  | | |   |     |  | ||||| |  |  | ||   |   || |      | ||     || ||||  ||     ||| || | |||||||||||||||||||| ||||||||| | || ||||| |||||||| || || |||||     |  || |  || |  ||||   |    ||   | ||  
-----gtttttagctttccatcgaaggattgacattggtgctattagttttttgtgtcatgaggtgggactgcaaggtttacttactttcccacttgttttgcagTTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCAGTTTGCAAGCACCGTGTAAG--CGATGGGTGGCATGGTGAAGCAGATGCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5342446|gb|AI794730.1|AI794730
EST:     ACCAAGTTAAGAGGGGAGAGCTTGTTCGTAGCTTACCATGCTTGCATCAG                         TTTCATGCAAACTGCATTGATCCATGGCTCCGACAACAAGGAACATGTCCT
genomic: ACCAAGTTAAGAGGGGAGAGCTTGTTCGTAGCTTACCATGCTTGCATCAGgtttgatgaa ... ttttatccagTTTCATGCAAACTGCATTGATCCATGGCTCCGACAACAAGGAACATGTCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattacctcgtataaatcataaatgactaattcacttctttctttttatccagTTTCATGCAAACTGCATTGATCCATGGCTCCGACAACAAGGAACATGTCCTGTGTGCAAATTAAGGATAGGGTCGGTAAGTGGGGGAAACAGGGAAAGCG
                          gactaat  putative branch site (score: 2)
                                ttcacttctttctttt  CT-rich tract
            tataaatcataaatga  TA-rich tract