1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cactacttccctaatattcctttaccccctaaatgttatactgtttgctatacatgtgggttgatctcttgcttttggtttcttctctccttgataacagCATGTGCTGGAACATGGGAAGTCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
species | Glycine max |
transcript | GLYMA11G14500.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGCAGTTAGCATGCTAGCTCAGGATCAGTATGGAAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAEST: gi|23057383|gb|BU578057.1|BU578057
genomic: GAGCAGTTAGCATGCTAGCTCAGGATCAGTATGGAAACTACGTTGTTCAGgtttataatt ... ttgataacagCATGTGCTGGAACATGGGAA
EST: GAGCAGTTAGCATGCTAGCTCAGGATCAGTATGGAAACTACGTTGTTCAG CATGTGCTGGAACATGGGEST: gi|193419465|gb|FK383591.1|FK383591
genomic: GAGCAGTTAGCATGCTAGCTCAGGATCAGTATGGAAACTACGTTGTTCAGgtttataatt ... ttgataacagCATGTGCTGGAACATGGG
EST: GAGCAGTTAGCATGCTAGCTCAGGATCAGTATGGAAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGTCTCATGAGCGTTCTTCTATAATAAAGGAA
genomic: GAGCAGTTAGCATGCTAGCTCAGGATCAGTATGGAAACTACGTTGTTCAGgtttataatt ... ttgataacagCATGTGCTGGAACATGGGAAGTCTCATGAGCGTTCTTCTATAATAAAGGAA
tgctatacatgtgggttgatctcttgcttttggtttcttctctccttgataacagCATGTGCTGGAACATGGGAAGTCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
ccttgat putative branch site (score: 5)
tctcttgcttttggtt CT-rich tract
ttgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactacttccctaatattcctttaccccctaaatgttatactgtttgctatacatgtgggttgatctcttgcttttggtttcttctctccttgataacagCATGTGCTGGAACATGGGAAGTCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - -cttccct
- - - - - - - - - - - taccccc
- - - - - - - - - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttg