1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggcaaaaaatgtgttgccaattttttgcaagttcttagcagagctggaccttgcatgtaaaatgatattaatcgatttgtgttctttcattgtatcacagCTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAAAAGCTAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCCACGGCCATTG
species | Glycine max |
transcript | GLYMA11G14240.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAATTTTGGAAAACGTAGGCTACAAAGATGATGAAGGTGTTGCAAATGAG CTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAAEST: gi|58022801|gb|CX709542.1|CX709542
genomic: AAATTTTGGAAAACGTAGGCTACAAAGATGATGAAGGTGTTGCAAATGAGgtaattcatc ... tgtatcacagCTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAA
EST: AAATTTTGGAAAACGTAGGCTACAAAGATGATGAAGGTGTTGCAAATGAG CTGTCCTTTCAAATGTGGACAAATCAAATCCAAGAAACTCTAAATTCTAAAEST: gi|22928886|gb|BU546025.1|BU546025
genomic: AAATTTTGGAAAACGTAGGCTACAAAGATGATGAAGGTGTTGCAAATGAGgtaattcatc ... tgtatcacagCTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAA
EST: AAATTTTGGAAAACGTAGGCTACAAAGATGATGAAGGTGTTGCAAATGAG CTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAA
genomic: AAATTTTGGAAAACGTAGGCTACAAAGATGATGAAGGTGTTGCAAATGAGgtaattcatc ... tgtatcacagCTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAA
ggaccttgcatgtaaaatgatattaatcgatttgtgttctttcattgtatcacagCTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAAAAGCTAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCCACGGCCATTG
tattaat putative branch site (score: 2)
ttctttcatt putative PPT
taaaatgatattaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcaaaaaatgtgttgccaattttttgcaagttcttagcagagctggaccttgcatgtaaaatgatattaatcgatttgtgttctttcattgtatcacagCTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAAAAGCTAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCCACGGCCATTG
- -aaaaaat
- - - - - -tgttgcc
- - - - - - - - - - - - -tgcaagt
- - - - - - - - - - - - - - - - - - - - - - - - ccttgca