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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaaaaatggcataacaatgctttcttctttttcttcctctcatcacatgcattctgtttttttctttctacactttttcttagcaaaatattattattctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA

Basic information

species Glycine max
transcript GLYMA11G14040.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14040.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 6
gtctgaaaaatggcataacaatgctttcttctttttcttcctctcatcacatgcattctgtttttttctttctacactttttcttagcaaaatattattattctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA
                                   | |     | |  | ||  ||  |  | | |||| | |     |    |   ||| ||         ||||||  |||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||||||| || || ||||||||||| |
----------------------------------gtatggaattgaatatatagatctttgtctcttctctatttggctcacttacccaagatg--------ctttgagcagGCATCATCAACATGGAAGATGGCAGGCAAGGATTGGAAGAGTTGCCGGAAACAAAGACCTCTATTTGGGAACTTTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996716|gb|BM086088.1|BM086088
EST:     AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAG                         GCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAA
genomic: AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAGgtctgaaaaa ... ctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAA
EST: gi|17023082|gb|BM094116.1|BM094116
EST:     AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAG                         GCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAA
genomic: AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAGgtctgaaaaa ... ctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAA
EST: gi|24205644|gb|BU964897.1|BU964897
EST:     AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAG                         GCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAA
genomic: AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAGgtctgaaaaa ... ctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAA
EST: gi|24206010|gb|BU965263.1|BU965263
EST:     AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACTTG                         GCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAA
genomic: AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAGgtctgaaaaa ... ctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAA
EST: gi|15201199|gb|BI424745.1|BI424745
EST:     AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAG                         GCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAA
genomic: AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAGgtctgaaaaa ... ctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttttttctttctacactttttcttagcaaaatattattattctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA
                                        ttattcttt  CT-rich tract
                    tttttcttagcaaaat  TA-rich tract