Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttattttaaatatcttaccaacatcttctatttatttttttctctctttcttctcatgtcaaaaactctatcttgcctgatttattattctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGCTACGACGTGAA

Basic information

species Glycine max
transcript GLYMA11G14040.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14040.2 (Glycine max), 3'ss of exon 9
lower sequence: EFJ16224 (Selaginella moellendorffii), 3'ss of exon 5
tttattttaaatatcttaccaacatcttctatttatttttttctctctttcttctcatgtcaaaaactcta----tcttgcctgatttattattctcgttgca-gGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGCTACGACGTGAA
                                               |   || ||   || ||| || |     || |   || |||  | || ||| || | |||||||||||||| ||||| ||||| |||||||| || || || |||||| | |||   | ||| || |||||||| |||||||| | ||||||| ||| 
----------------------------------------------gtaagttttcg-atcgaaagctttcaagttcgtaaatgttttccttttttcgatgaaagGTACTGAAGAAGAAGCTGCCGAAGCTTACGACATCGCAGCCATCAAGTTCCGCGGTGCAAGCGCGGTGACAAACTTCGACATGAGTCACTACGACTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996716|gb|BM086088.1|BM086088
EST:     AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA                         GTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
genomic: AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccaca ... ctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
EST: gi|24206010|gb|BU965263.1|BU965263
EST:     AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA                         GTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
genomic: AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccaca ... ctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
EST: gi|24205644|gb|BU964897.1|BU964897
EST:     AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA                         GTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
genomic: AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccaca ... ctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
EST: gi|17023082|gb|BM094116.1|BM094116
EST:     AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA                         GTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
genomic: AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccaca ... ctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
EST: gi|15201199|gb|BI424745.1|BI424745
EST:     AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA                         GTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA
genomic: AAGAATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAgtaagccaca ... ctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttcttctcatgtcaaaaactctatcttgcctgatttattattctcgttgcagGTACTGAAGAAGAGGCTGCTGAAGCATACGACATAGCTGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGCTACGACGTGAA
                              gcctgat  putative branch site (score: 4)
                                        ttattctc  putative PPT
                                 tgatttattattct  TA-rich tract