1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...cattttccttaatatagtattgtagctaatgtcataagatgtgttgaacttgatccatacttttatttataatggttgagtgtggctttgaaccttgcagGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAAAGTTTACTCTCTGACCAGAACCGAAGCATTGCCACACTTGCCATTACTA
species | Glycine max |
transcript | GLYMA11G12610.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTCGTCCAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAG GTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAAEST: gi|208329864|gb|GE128897.1|GE128897
genomic: GTTCGTCCAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGgttaaccttt ... aaccttgcagGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAA
EST: GTTCGTCCAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAG GTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAAEST: gi|193542575|gb|FK499276.1|FK499276
genomic: GTTCGTCCAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGgttaaccttt ... aaccttgcagGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAA
EST: GTTCGTCCAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAG GTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAAEST: gi|208154835|gb|GD957596.1|GD957596
genomic: GTTCGTCCAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGgttaaccttt ... aaccttgcagGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAA
EST: GTTCGTCCAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAG GTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAA
genomic: GTTCGTCCAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGgttaaccttt ... aaccttgcagGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAA
gaacttgatccatacttttatttataatggttgagtgtggctttgaaccttgcagGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAAAGTTTACTCTCTGACCAGAACCGAAGCATTGCCACACTTGCCATTACTA
acttgat putative branch site (score: 5)
atccatacttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttccttaatatagtattgtagctaatgtcataagatgtgttgaacttgatccatacttttatttataatggttgagtgtggctttgaaccttgcagGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAAAGTTTACTCTCTGACCAGAACCGAAGCATTGCCACACTTGCCATTACTA
- - - - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtgtg