1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...catattcattttgtgtttaatgatttatgtatatcgcaatagttattttcataatttttcccgtgtaactttgatgtttatttgacatatgccgtgacagATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAG
species | Glycine max |
transcript | GLYMA11G11960.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAG ATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTCEST: gi|7478069|gb|AW666124.1|AW666124
genomic: TGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAGgtgctgttct ... gccgtgacagATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTC
EST: TGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAG ATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTCEST: gi|120491021|gb|EH219188.1|EH219188
genomic: TGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAGgtgctgttct ... gccgtgacagATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTC
EST: CCCGCCTATATTTCGCTTTTGTGCTATACCCCAG ATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTCEST: gi|22930235|gb|BU547374.1|BU547374
genomic: CCCGCCTATATTTCGCTTTTGTGCTATACCCCAGgtgctgttct ... gccgtgacagATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTC
EST: CGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAG ATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTCEST: gi|58014892|gb|CX701634.1|CX701634
genomic: CGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAGgtgctgttct ... gccgtgacagATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTC
EST: TGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAG ATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTCEST: gi|208337947|gb|GE133887.1|GE133887
genomic: TGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAGgtgctgttct ... gccgtgacagATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTC
EST: TGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAG ATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTCEST: gi|208340738|gb|GE133674.1|GE133674
genomic: TGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAGgtgctgttct ... gccgtgacagATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTC
EST: TGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAG ATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTC
genomic: TGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAGgtgctgttct ... gccgtgacagATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTC
ttttcataatttttcccgtgtaactttgatgtttatttgacatatgccgtgacagATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAG
tttgatgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catattcattttgtgtttaatgatttatgtatatcgcaatagttattttcataatttttcccgtgtaactttgatgtttatttgacatatgccgtgacagATAATGGCAATTGGAACACTTGCATTATGCTACAATAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAG
- - - - ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt