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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgtctcttatcttattaaagggcttccattatatcacttcatacttccgcatatcattttatcttttacttttatgatttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG

Basic information

species Glycine max
transcript GLYMA11G10770.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------gcatgtctcttatc--ttattaaagggcttccattatatcacttca-tacttccgcatatcatt-ttatcttttacttttatgat-ttgttttta--gGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG
                             |      ||  |||  || ||   |  ||    ||   |   | |  |  |     |||   ||  ||  ||| | | ||   || ||| | |||  |||||||||||||| ||||| |||||||||||||| || ||||||||||| ||
gcacacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgctattacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986202|gb|BE660310.1|BE660310
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCT
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGG-ATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCT
EST: gi|15287567|gb|BI471458.1|BI471458
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|12773652|gb|BG238579.1|BG238579
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|209721948|gb|BW680083.1|BW680083
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|15204411|gb|BI427179.1|BI427179
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|9899327|gb|BE608295.1|BE608295
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCCTTCA-TCTCTCTGACATACATTGCTTCAGAAAGGATCATTTCT
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATC-TTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCT
EST: gi|19053059|gb|BM731726.1|BM731726
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|7030180|gb|AW459963.1|AW459963
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacttcatacttccgcatatcattttatcttttacttttatgatttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG
                                            tttgttttt  CT-rich tract
                 atatcattttatcttt  TA-rich tract