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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctttttgtttctgttctatcaatgaataagagtatatcttgttattgaataaaactgcaattaccttcaagatattacatcattggtgcatggatgctttgttacagTTGCAGCATGACTATATTTTGGGTAATTACCCTATTGGAAGGAATGATGCAGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA

Basic information

species Glycine max
transcript GLYMA11G09480.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09480.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G423861_T01 (Zea mays), 3'ss of exon 7
gtatgtctttttgtttctgttctatcaatgaataagagtatatcttgttattgaataaaactgcaattaccttcaagatattacatcattggtgcatggatgctttgttacagTTGCAGCATGACTATATTTTGGGTAATTACCCTATTGGAAGGAATGATGCAGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA
                  || ||   || || |   ||| | | | |||||| ||  || ||     |   |  || |||   | | |   ||      |   | |  | |||||||| ||||| || |||||||| || || ||| |||| ||| |||||||  | || || |||||  |||||||||||| ||||||||||||  |    |
------------------gtactg--aaggattgccagtttgtgt-gttattcaagtaatct-----tggttcaaaaatagagc-taacaagta-----acattgttctgcagTTGCAACATGATTACATTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACA

upper sequence: GLYMA11G09480.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 7
gtatgtctttttgtttctgttctatcaatgaataagagtatatcttgtt--attgaataaaactgcaattaccttcaaga------------tattacatcattggtgcatggat-------gcttt----gttacagTTGCAGCATGACTATATTTTGGGTAATTACCCTATTGGAAGGAATGATGCAGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA
||||||  | || |||       ||   |||  ||   |   |  | ||  | |   || ||||   | || ||    ||             | ||  | |||   || | |||       | |||    ||| |||||||| ||||||||||| ||||| ||||| ||| |||||||  ||||||| || || || ||||||||||| || |||  ||||||||||||  || |  
gtatgtaatcttattttaaagtaatttgtgagcaactctgattaatatttgaatatgtacaactttgactaactatgggaattttgaacaggcagtatctgatttaagctttgatctaacttgtttttattgtttcagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgcaattaccttcaagatattacatcattggtgcatggatgctttgttacagTTGCAGCATGACTATATTTTGGGTAATTACCCTATTGGAAGGAATGATGCAGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA
                                            ctttgtt  CT-rich tract
                aagatatta  TA-rich tract