1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtccttcatcctattgctttcatttttaacagtatagcaggtgttaaatgattcttacctttggattatctcccttattgactcagATATACACAAACGAAAGAAGCCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCTAAACCACA
species | Glycine max |
transcript | GLYMA11G09370.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCA ATATACACAAACGAAAGAAGCCATCTTCACCTTACATGGATEST: gi|7042403|gb|AW472297.1|AW472297
genomic: TAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAgtatgtcctt ... attgactcagATATACACAAACGAAAGAAGCCATCTTCACCTTACATGGAT
EST: TAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTANAAGCATCA ATATACACAAACGAAAGAAGCCATCTTCACCTTACATGGATGATGCAGTCA
genomic: TAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAgtatgtcctt ... attgactcagATATACACAAACGAAAGAAGCCATCTTCACCTTACATGGATAATGCAGTCA
gtatagcaggtgttaaatgattcttacctttggattatctcccttattgactcagATATACACAAACGAAAGAAGCCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCTAAACCACA
tattgac putative branch site (score: 2)
ttatctcccttatt CT-rich tract
ttaaatgattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtccttcatcctattgctttcatttttaacagtatagcaggtgttaaatgattcttacctttggattatctcccttattgactcagATATACACAAACGAAAGAAGCCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCTAAACCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC