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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacactagtaacaacagtaaaatgtatacgcaacattatatttgtattatgtaaggtttttccttctatatttgaaatgtgtgctaactatgttattgacagTCCTATCCTCTGGGCATCAGTTGTAGTTTACCTTCTCATCAATATTAATG

Basic information

species Glycine max
transcript GLYMA11G09270.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208219865|gb|GE018989.1|GE018989
EST:     AAGATGACTTCAAGGTGGTTGTGGGAGTCAG                         TCCTATCCTCTGGGCATCAGTTGTAGTTTACCTTCTCATCAATATTAATG
genomic: AAGATGACTTCAAGGTGGTTGTGGGAGTCAGgtaacactag ... ttattgacagTCCTATCCTCTGGGCATCAGTTGTAGTTTACCTTCTCATCAATATTAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtaaggtttttccttctatatttgaaatgtgtgctaactatgttattgacagTCCTATCCTCTGGGCATCAGTTGTAGTTTACCTTCTCATCAATATTAATG
                                  tgctaac  putative branch site (score: 1)
                ttctatatttgaaat  TA-rich tract