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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcctaataaattccatgattatttgttttgttcttttaacatagattgatctgctgtattttgtgcactaagcgataattcatgggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCCATGCAAAATCAGTCTGAG

Basic information

species Glycine max
transcript GLYMA11G08290.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08290.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 8
gtatgcctaataaattccatgattatttgttttgttcttttaacatagattgatctgctgtattttgtgcactaagcgataattcatgggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCCATGCAAAATCAGTCTGAG
   |   || |   ||  |  |  | |    |  |  | |  | |||  || ||    | |   |    |     |   |    | |    | || |||| ||||| |||||||| |||||||| ||||| || ||||||||||| ||  ||||    |||   |||
--gtaagtatttgttt--agaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaat-tgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG

upper sequence: GLYMA11G08290.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------------------------------------gtatgccta-ataaattccatgattatttgttttgttcttttaacatagattgatctgctgtattttgtgcactaagcgataattcatgggttctg--cagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCCATGCAAAATCAGTCTGAG
                                                          |  |  | | | |  |       |   |   ||      | ||| |    ||||||||| | || |      | |  |    |  | | || ||  |||||||| || |||||||| ||||| ||||| ||||| |||||||| || |||||||||||| |||| |||
gtatgtgactgaaccctcacttttccaaaaagtaaaaaggaaaaacaagcacaggcacacacacacacacacacacaagagagaggagatggaaaaatgacagatgaggatctgctgcagttagcatttcatgaaaagcattttcgattttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019852|gb|CX706594.1|CX706594
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|58023403|gb|CX710144.1|CX710144
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|193339713|gb|FK302316.1|FK302316
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTACAAGGATTTGCTGGCGTC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGT-CAAGGATTTGCTGGCGTC
EST: gi|57574672|gb|CX547647.1|CX547647
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|6847457|gb|AW349818.1|AW349818
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|254318747|gb|GR830311.1|GR830311
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGG-TTGACCCAAATGACCCTTCTGTCAAGGATTTGCTG
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTG
EST: gi|213602700|gb|DB978115.1|DB978115
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|213597471|gb|DB981639.1|DB981639
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|214006796|gb|DB987664.1|DB987664
EST:     TCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGAGCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|254318748|gb|GR830312.1|GR830312
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|21602391|gb|BQ612722.1|BQ612722
EST:     GATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: GATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|151395379|gb|EV265250.1|EV265250
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|13479589|gb|BG508932.1|BG508932
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|208307682|gb|GE109278.1|GE109278
EST:     TAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
genomic: TAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|208301073|gb|GE097338.1|GE097338
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTNACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|22931412|gb|BU548551.1|BU548551
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|6069956|gb|AW099536.1|AW099536
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|27426751|gb|CA938271.1|CA938271
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|209715415|gb|BW684699.1|BW684699
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|37995492|gb|CF807081.1|CF807081
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|193638789|gb|FK585990.1|FK585990
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTNTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|193554701|gb|FK515538.1|FK515538
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTNTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|193554701|gb|FK515538.1|FK515538
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTNTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagattgatctgctgtattttgtgcactaagcgataattcatgggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCCATGCAAAATCAGTCTGAG
    gattgat  putative branch site (score: 4)
                                   ataattcat  TA-rich tract