1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtttaccttaaatatttactaagaaatttatccaaaaataaccttagcccagaatcagagaaatttgtttcatcatgttgagttggcttttgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAATGTCGAAGTCTACTAATTAATATCACTTGCACTTGCTCAGATATCATG
species | Glycine max |
transcript | GLYMA11G08230.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATG GTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAEST: gi|9983988|gb|BE658096.1|BE658096
genomic: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATGgtaatatcac ... tgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGA
EST: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATG GTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAEST: gi|21637544|gb|BM107699.1|BM107699
genomic: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATGgtaatatcac ... tgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGA
EST: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATG GTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAEST: gi|10238014|gb|BE806902.1|BE806902
genomic: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATGgtaatatcac ... tgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGA
EST: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATG GTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAEST: gi|120534689|gb|EH262822.1|EH262822
genomic: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATGgtaatatcac ... tgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGA
EST: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATG GTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAEST: gi|16342619|gb|BI968214.1|BI968214
genomic: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATGgtaatatcac ... tgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGA
EST: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATG GTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAEST: gi|213592298|gb|DB983032.1|DB983032
genomic: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATGgtaatatcac ... tgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGA
EST: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATG GTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGA
genomic: AATGGAAAAGGGTATAGATGACATAATGGTTTCATTGGCTGCAAAAGATGgtaatatcac ... tgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGA
agcccagaatcagagaaatttgtttcatcatgttgagttggcttttgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAATGTCGAAGTCTACTAATTAATATCACTTGCACTTGCTCAGATATCATG
cttttgt CT-rich tract
aaatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaccttaaatatttactaagaaatttatccaaaaataaccttagcccagaatcagagaaatttgtttcatcatgttgagttggcttttgtggtgtagGTATTGATTGGATTGAGTACAAGAGGCAATTGAAGAAGGCAGAGCAATGGAATGTCGAAGTCTACTAATTAATATCACTTGCACTTGCTCAGATATCATG
- - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - -cccagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt