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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactttgttactgttacatacaattgaaaccatcttttatatgcttttagtggataaattttcctgtgctctctgttgcttctttcgtcatctttcacttgattcatattctttatctgaaggaaagtttatgtaatgcttcctgttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG

Basic information

species Glycine max
transcript GLYMA11G07910.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533498|gb|EH261631.1|EH261631
EST:     TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: gi|192324841|gb|FK015352.1|FK015352
EST:     TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: gi|51343377|gb|CO984110.1|CO984110
EST:     TTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: gi|13791595|gb|BG654186.1|BG654186
EST:     TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTNCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: gi|120533133|gb|EH261266.1|EH261266
EST:     TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: gi|193365453|gb|FK329776.1|FK329776
EST:     TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcatattctttatctgaaggaaagtttatgtaatgcttcctgttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
 acttgat  putative branch site (score: 5)
 cttcctgtttt  putative PPT
 aaagtttatgtaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaactttgttactgttacatacaattgaaaccatcttttatatgcttttagtggataaattttcctgtgctctctgttgcttctttcgtcatctttcacttgattcatattctttatctgaaggaaagtttatgtaatgcttcctgttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT