1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaaactttgttactgttacatacaattgaaaccatcttttatatgcttttagtggataaattttcctgtgctctctgttgcttctttcgtcatctttcacttgattcatattctttatctgaaggaaagtttatgtaatgcttcctgttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
species | Glycine max |
transcript | GLYMA11G07910.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGCATCTCCACAG GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAGEST: gi|13791595|gb|BG654186.1|BG654186
genomic: TTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG GATGTGTGGACTGAGCTTGGACGTNCCTGTGGCATTCATCAAAAGCAGEST: gi|192324841|gb|FK015352.1|FK015352
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAGEST: gi|193365453|gb|FK329776.1|FK329776
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAGEST: gi|120533133|gb|EH261266.1|EH261266
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAGEST: gi|120533498|gb|EH261631.1|EH261631
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
gattcatattctttatctgaaggaaagtttatgtaatgcttcctgttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
acttgat putative branch site (score: 5)
cttcctgtttt putative PPT
aaagtttatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactttgttactgttacatacaattgaaaccatcttttatatgcttttagtggataaattttcctgtgctctctgttgcttctttcgtcatctttcacttgattcatattctttatctgaaggaaagtttatgtaatgcttcctgttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT