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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatctttttaaatctgctattgataaatttttgacatttttcaataaatttctaatgaattaaatgacagGATATGCTGGATCCACAGTTTCAGAACTTAAGCTCTTCCACAGGTTCCAGACATCCATATTCACTTTATGGTG

Basic information

species Glycine max
transcript GLYMA11G07550.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193393059|gb|FK358365.1|FK358365
EST:     AGAGATCTGTATCTGACAAGTTTTGTAGAAGACAAGACTCTTCATCCTCC                         GATATGCTGGATCCACAGTTTCAGAACTTAAGCT
genomic: AGAGATCTGTATCTGACAAGTTTTGTAGAAGACAAGACTCTTCATCCTCCgtgagtatct ... taaatgacagGATATGCTGGATCCACAGTTTCAGAACTTAAGCT
EST: gi|208169011|gb|GD970528.1|GD970528
EST:     AGAGATCTGTATCTGACAAGTTTTGTAGAAGACAAGACTCTTCATCCTCC                         GATATGCTGGATCCACAGTTTCAGAACTTAAG
genomic: AGAGATCTGTATCTGACAAGTTTTGTAGAAGACAAGACTCTTCATCCTCCgtgagtatct ... taaatgacagGATATGCTGGATCCACAGTTTCAGAACTTAAG
EST: gi|193514273|gb|FK470589.1|FK470589
EST:     AGAGATCTGTATCTGACAAGTTTTGTAGAAGACAAGACTCTTCATCCTCC                         GATATGCTGGATCCACA
genomic: AGAGATCTGTATCTGACAAGTTTTGTAGAAGACAAGACTCTTCATCCTCCgtgagtatct ... taaatgacagGATATGCTGGATCCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctattgataaatttttgacatttttcaataaatttctaatgaattaaatgacagGATATGCTGGATCCACAGTTTCAGAACTTAAGCTCTTCCACAGGTTCCAGACATCCATATTCACTTTATGGTG
                                  ttctaat  putative branch site (score: 2)
       ataaatttttgacatt  TA-rich tract