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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgttcacgtgcatgagaaatatctaccagatatttgcgtaaccattataaaaattattagtttttttttcattctttcagatattactaattcaatttggaactagaacatctgatgtcattatctttttcatttgttgcatgtgtgcagGGACATCAAAGGAGCTAACTTGCTAGTTGATTCTGCTGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCAC

Basic information

species Glycine max
transcript GLYMA11G06200.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06200.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os07g02780.1 (Oryza sativa), 3'ss of exon 5
gtactgttcacgtgcatgagaaatatctaccagatatttgcgtaaccattataaaaattattagtttttttttcattctttcagatattactaattcaatttggaactagaacatctgatgtcat-tatct---ttttcatttgttgcatgtgtgcagGGACATCAAAGGAGCTAACTTGCTAGTTGATTCTGCTGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCAC
                                                          || |   |    || ||   |||    |||       ||   ||  |  ||    | || ||||||| ||| |     |  |  ||| |  | | | |||||| ||||||||||| ||| |||||||||||  |  |||||| || ||  | ||||||||||| ||||||||||| 
---------------------------------------------------------gtactttctgcacttccagaattttgtttatgttggtctccgcttcaatttatgttaccttatgtcatgtatgtgaaagtaaacatgtcgactct-tacagGGATATCAAAGGAGCAAACCTGCTAGTTGATGTTAGTGGTGTAGTCAAATTAGCTGACTTTGGAATGGCCAAGCAT

upper sequence: GLYMA11G06200.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 5
gtactgttcacgtgcatgagaaatatctaccagatatttgcgtaaccattataaaaattattagtttttttttcattctttcagatattactaattcaatttggaactagaacatctgatgtcattatctttttcatttgttgcatgtgtgcagGGACATCAAAGGAGCTAACTTGCTAGTTGATTCTGCTGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCAC
                                              |||| |     |  || |   |||  |   ||||| |  || |  |||||     |     | ||| |||   | | |        |||     |   || | |  || ||||||||||| ||||| ||||| |||||| |  |||| ||||||||||||||||||||||||||| | || || 
----------------------------------------------cattgtg----tctttggggatttaata--tcttttatctagtg-taatttttcctcctctttgaatatcaattctgacatgtaagttcgaccatcctattt-tatagAGACATCAAAGGGGCTAATTTGCTTGTTGATGCATCTGGAGTTGTTAAGCTTGCTGACTTTGGGATGTCTAAACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggaactagaacatctgatgtcattatctttttcatttgttgcatgtgtgcagGGACATCAAAGGAGCTAACTTGCTAGTTGATTCTGCTGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCAC
              atctgat  putative branch site (score: 4)
                        attatctttttcattt  TA-rich tract