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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtacctcttcaattaatttctgttttggctcatgcattagacttaaatggacaaaagatgattcaggaagcgcccatttattagttgagtttaattctgatcatgcagGTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCCGATCAACAACAATGGCAAGCCGGGCCTCCACATTTGTTAG

Basic information

species Glycine max
transcript GLYMA11G05720.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933022|gb|BU550161.1|BU550161
EST:     CACAAAAGCCTCACAATTTTGCACATCATCTTCACCAACCAAGTTTTCAT                         GTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTA
genomic: CACAAAAGCCTCACAATTTTGCACATCATCTTCACCAACCAAGTTTTCATgtgggtacct ... gatcatgcagGTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTA
EST: gi|298179532|gb|HO028003.1|HO028003
EST:     CACAAAAGCCTCACAATTTTGCACATCATCTTCACCAACCAAGTTTTCAT                         GTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTA
genomic: CACAAAAGCCTCACAATTTTGCACATCATCTTCACCAACCAAGTTTTCATgtgggtacct ... gatcatgcagGTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTA
EST: gi|208174472|gb|GD969959.1|GD969959
EST:     ACCAAGTTTTCAT                         GTTTCCTTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGT
genomic: ACCAAGTTTTCATgtgggtacct ... gatcatgcagG-TTCC-TAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGT
EST: gi|209714329|gb|BW665591.1|BW665591
EST:     CACAAAAGCCTCACAATTTTGCACATCATCTTCACCAACCAAGTTTTCAT                         GTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTA
genomic: CACAAAAGCCTCACAATTTTGCACATCATCTTCACCAACCAAGTTTTCATgtgggtacct ... gatcatgcagGTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTA
EST: gi|23732089|gb|BU764199.1|BU764199
EST:     CACAAAAGCCTCACAATTTTGCACATCATCTTCACCAACCAAGTTTTCAT                         GTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTA
genomic: CACAAAAGCCTCACAATTTTGCACATCATCTTCACCAACCAAGTTTTCATgtgggtacct ... gatcatgcagGTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagatgattcaggaagcgcccatttattagttgagtttaattctgatcatgcagGTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCCGATCAACAACAATGGCAAGCCGGGCCTCCACATTTGTTAG
                                         ttctgat  putative branch site (score: 3)
                      atttattagttgagtt  TA-rich tract