1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgactcttcagttttcctatctggcattgaccttgcatttagtatagattgcaatttaacaattcttgtatgacacgtagGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACAGCTAGAGAAGCAATG
species | Glycine max |
transcript | GLYMA11G05340.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAEST: gi|193383360|gb|FK347265.1|FK347265
genomic: CCTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGgtgactcttc ... tgacacgtagGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTA
EST: TCAATGCAGATAATCAGCATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAEST: gi|213605531|gb|DB974274.1|DB974274
genomic: TCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGgtgactcttc ... tgacacgtagGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTA
EST: CTTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAEST: gi|10233590|gb|BE802478.1|BE802478
genomic: CCTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGgtgactcttc ... tgacacgtagGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTA
EST: CCTGGTCTAAATTCATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAEST: gi|38193563|gb|CF922769.1|CF922769
genomic: CCTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGgtgactcttc ... tgacacgtagGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTA
EST: CCTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAEST: gi|193321178|gb|FK283564.1|FK283564
genomic: CCTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGgtgactcttc ... tgacacgtagGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTA
EST: TCAATGCAGATAATCAGCATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAEST: gi|214009784|gb|DB986911.1|DB986911
genomic: TCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGgtgactcttc ... tgacacgtagGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTA
EST: CCTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTA
genomic: CCTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGgtgactcttc ... tgacacgtagGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTA
attgaccttgcatttagtatagattgcaatttaacaattcttgtatgacacgtagGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACAGCTAGAGAAGCAATG
atttaac putative branch site (score: 3)
aatttaacaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactcttcagttttcctatctggcattgaccttgcatttagtatagattgcaatttaacaattcttgtatgacacgtagGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACAGCTAGAGAAGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA