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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggataaatttttctccagtcttaaatgtgttattcctctcgttcaaacatatcatgtagacagacactcaaggtctaaaggaaatttgtcattttcaaagacagtcactgtccgtttaatcataatttctttttcattggttgttctaacagGGAATTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAG

Basic information

species Glycine max
transcript GLYMA11G02540.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207784428|gb|GD757283.1|GD757283
EST:     GGGCAGTTTATCGCAACGTATCCTTTGCCTGGATTGGTCAAGATATACTT                         GGAATTGCACTGATAATCACAGTTCTA
genomic: GGGCAGTTTATCGCAACGTATCCTTTGCCTGGATTGGTCAAGATATACTTgtaaggataa ... gttctaacagGGAATTGCACTGATAATCACAGTTCTA
EST: gi|254328592|gb|GR832964.1|GR832964
EST:     GGGCAGTTTATCGCAACGTATCCTTTGCCTGGATTGGTCAAGATATACTT                         GGAATTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTC
genomic: GGGCAGTTTATCGCAACGTATCCTTTGCCTGGATTGGTCAAGATATACTTgtaaggataa ... gttctaacagGGAATTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTC
EST: gi|208066190|gb|GD863987.1|GD863987
EST:     GGGCAGTTTATCGCAACGTATCCTTTGCCTGGATTGGTCAAGATATACTT                         GGAATTGCACTGATAATCACAGTTCTA
genomic: GGGCAGTTTATCGCAACGTATCCTTTGCCTGGATTGGTCAAGATATACTTgtaaggataa ... gttctaacagGGAATTGCACTGATAATCACAGTTCTA
EST: gi|7232562|gb|AW567917.1|AW567917
EST:     GGGCAGTTTATCGCAACGTATCCTTTGCCTGGATTGGTCAAGATATACTT                         GGAATTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTC
genomic: GGGCAGTTTATCGCAACGTATCCTTTGCCTGGATTGGTCAAGATATACTTgtaaggataa ... gttctaacagGGAATTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagacagtcactgtccgtttaatcataatttctttttcattggttgttctaacagGGAATTGCACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAG
                gtttaat  putative branch site (score: 4)
                                           ttgttct  putative PPT
                 tttaatcataatttct  TA-rich tract