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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctttgttttccctctcttaacttggaaaaatggtttgttctgtactagtaaaaatctctcctcaggatttgcttatggtctggtaaatgatttttcttttgttgatctggtgtgtctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCTAGATCAGAAGATTAGATCCTCTAGAGAAGAATCAAATGAGACCACCACC

Basic information

species Glycine max
transcript GLYMA11G01780.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208167564|gb|GD959630.1|GD959630
EST:     GATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193642427|gb|FK589835.1|FK589835
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193709720|gb|FK642586.1|FK642586
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208029800|gb|GD829714.1|GD829714
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTCATAGAAGAATCTTCTACGATGTATAGCCAAATACACC
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTA-GATGTATAGCCAAATACACC
EST: gi|193577618|gb|FK536169.1|FK536169
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208105737|gb|GD906974.1|GD906974
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTCATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|207686952|gb|GD668828.1|GD668828
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193377563|gb|FK338833.1|FK338833
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208117498|gb|GD917740.1|GD917740
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208044751|gb|GD841903.1|GD841903
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208107822|gb|GD901564.1|GD901564
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193389584|gb|FK357185.1|FK357185
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208121645|gb|GD916232.1|GD916232
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208136321|gb|GD933247.1|GD933247
EST:     GCTGGGGATAATTTTTATTAGG                         ATCTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193474754|gb|FK442837.1|FK442837
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATGCACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193701779|gb|FK634661.1|FK634661
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193676092|gb|FK620078.1|FK620078
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208265945|gb|GE061368.1|GE061368
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193376390|gb|FK342223.1|FK342223
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193318305|gb|FK287507.1|FK287507
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208250970|gb|GE047321.1|GE047321
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208307614|gb|GE107586.1|GE107586
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208206163|gb|GE007484.1|GE007484
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|207801544|gb|GD773894.1|GD773894
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193451379|gb|FK420571.1|FK420571
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208162350|gb|GD963109.1|GD963109
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208171205|gb|GD971028.1|GD971028
EST:     GCTGGGGACAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208176376|gb|GD975601.1|GD975601
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208227895|gb|GE027837.1|GE027837
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208258036|gb|GE055771.1|GE055771
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|207730501|gb|GD705988.1|GD705988
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193676042|gb|FK617382.1|FK617382
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193607235|gb|FK558702.1|FK558702
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208050155|gb|GD849466.1|GD849466
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|207776070|gb|GD749909.1|GD749909
EST:     GCTGGGGATAATTTTTTATTTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACC
genomic: GCTGGGGATAA-TTTTTA-TTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACC
EST: gi|208201043|gb|GD996568.1|GD996568
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208174068|gb|GD968547.1|GD968547
EST:     GGGGGTAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208288046|gb|GE082603.1|GE082603
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208251087|gb|GE047382.1|GE047382
EST:     GGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|17022795|gb|BM093829.1|BM093829
EST:     CTGTAGGTAATAAGAATAGACGTGGCCAGCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: CTGTAGGTAATAAGAATAGACGTGGCCAGCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|207705208|gb|GD687800.1|GD687800
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193303711|gb|FK272121.1|FK272121
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208074958|gb|GD875455.1|GD875455
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193364126|gb|FK333082.1|FK333082
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193421580|gb|FK391839.1|FK391839
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208235619|gb|GE031065.1|GE031065
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193682936|gb|FK625084.1|FK625084
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193380292|gb|FK348726.1|FK348726
EST:     GCTGGGGATAATTTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAA-TTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|208282940|gb|GE078938.1|GE078938
EST:     GGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
EST: gi|193605411|gb|FK557285.1|FK557285
EST:     GGGGATAATTTTTATTTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACC
genomic: GGGGATAATTTTTA-TTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACC
EST: gi|208109184|gb|GD902086.1|GD902086
EST:     GCTGGGGATAATTTTTATTAGG                         ATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT
genomic: GCTGGGGATAATTTTTATTAGGgtaagtcttt ... ctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttatggtctggtaaatgatttttcttttgttgatctggtgtgtctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCTAGATCAGAAGATTAGATCCTCTAGAGAAGAATCAAATGAGACCACCACC
                             tgttgat  putative branch site (score: 4)
                                            tctgttt  putative PPT
             taaatgatttttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtctttgttttccctctcttaacttggaaaaatggtttgttctgtactagtaaaaatctctcctcaggatttgcttatggtctggtaaatgatttttcttttgttgatctggtgtgtctgtttgcagATTTATAGAAGCTTATAGAAGAATCTTCTAGATGTATAGCCAAATACACCTAGATCAGAAGATTAGATCCTCTAGAGAAGAATCAAATGAGACCACCACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA