1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attacttttaagactcagaatattatgtcccccttttccattctggtttcctacaagtatacctcttggctcttacattgtcatgtcttttctggtgcagCAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG
species | Glycine max |
transcript | GLYMA10G43930.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAG CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGEST: gi|7692445|gb|AW760551.1|AW760551
genomic: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGgtaactatag ... tctggtgcagCAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG
EST: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAG CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGEST: gi|213594931|gb|DB977245.1|DB977245
genomic: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGgtaactatag ... tctggtgcagCAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG
EST: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAG CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGEST: gi|58024955|gb|CX711696.1|CX711696
genomic: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGgtaactatag ... tctggtgcagCAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG
EST: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAG CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGEST: gi|31461602|gb|CD403630.1|CD403630
genomic: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGgtaactatag ... tctggtgcagCAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG
EST: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAG CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGEST: gi|298173901|gb|HO017237.1|HO017237
genomic: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGgtaactatag ... tctggtgcagCAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG
EST: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAG CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACACTCAGAG
genomic: TTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGgtaactatag ... tctggtgcagCAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG
gtttcctacaagtatacctcttggctcttacattgtcatgtcttttctggtgcagCAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG
ctcttac putative branch site (score: 3)
tgtcttttct putative PPT
aagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacttttaagactcagaatattatgtcccccttttccattctggtttcctacaagtatacctcttggctcttacattgtcatgtcttttctggtgcagCAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG
- - - - - - - - - - - - - gtccccc
- - - - - - - - - - - - - - - - - - -ccattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtc