Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagcaaaatttaaatgaggctttttgatttcctgacttgcatgaagtagctaatccctaaaatgttctcttgctaatgtgaatatgtgatttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC

Basic information

species Glycine max
transcript GLYMA10G42940.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42940.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 8
---------------------------------------------------------------------------aaagcaaaatttaaatgaggctttttgatttcctgacttgcatgaagt--agctaatccctaaaa----tgttctcttgctaatgtgaatatgtgatttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC
                                                                              ||  | |||   |  || | | |      |    ||    |||||  | || ||   ||||            || ||||    |   |    | |  | |||||||||||||| || ||||||||||| ||||| ||||| ||||| || || ||||| ||||||||||| ||||||||||| ||||| || ||||| ||  
gtacatatagcagacttttgaagttctgattcataccaatttgttatgcatggaaactaattctgctagtgtatatgtgcttattttctgtatggttatatatgcatcatttttaacagaagttgacctgattgttaaaggtagaacatattttctaacaccaggctactctgt-ttacagGCAAATGATCCCACCATTGAACGTATCATCACCCCTCGAATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCT

upper sequence: GLYMA10G42940.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 8
---aaagcaaaatttaaatgaggcttt-ttgatttcctgacttgcatgaagtagctaatccctaaaatgttctcttgctaatgtgaatatgtgatttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC
       |      |  || | | |      | |   |        |||  ||   | |   ||  |     | ||  |||       ||      |  | ||||| |||||||| || ||||||||||||||||| ||||| |||||||| || || || ||||||||||| ||||||||||| |||||||| ||||| ||  
ctatcctctggccctgcataacgatgagccaaatatattctacatgtgacataatcagtgtatagcacagcatatttttaacaccttgat----cctcttacagGCTAATGATCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCT

upper sequence: GLYMA10G42940.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 8
--aaagcaaaatttaaatgaggctttttgatttcctgacttgcatgaagtagctaatccctaaaatgttctcttgctaatg--tgaatatgtgatttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC
     ||| |   |||    |      | |||| || | ||   |||  ||  || |   ||| |     | ||  |||    | |||      | |  | ||||| || || || || ||||||||||||||||| ||||| |||||||| || || || ||||||||||| ||||||||||| |||||||| ||||| ||  
cccctgcaca-cataatcatgagccaatcattttctaaatt---tgacataattagtgtataatacagcatatttttaacacctcaattctctctgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCT

upper sequence: GLYMA10G42940.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 9
aaagcaaaatttaaatgaggctttttgatttcctgacttgcatgaagtagctaatccctaaaatgttctcttgctaatgtgaatatgtgatttac-tgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC
            || |   ||  |   | | |  ||| | | ||||| |  |  |   |  |||||| |  ||    | |     | || ||| |   |||||||| || || || ||||| ||||| |||||||||||||| || ||||| |||||||| || ||||| |||||||||||||||||||| ||||| || |
----------gcaagtctcgcaatcacactaca-gacat-cttgaagcaaattttagttccaatgtttttctgaaggtttctcattctgttttccgcacagGCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCACTTACAACTGCTGAGTACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCATTC

upper sequence: GLYMA10G42940.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
-----aaagcaaaatttaaatgaggctttttgatttcctgacttgcatgaagt----------agctaatccctaaaatgttctcttgctaatg--tgaatatgtgatttactg--cagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC
      |    ||||| | ||   | | |||  | |  |   | |  | || |          | | |  |   | |||  |    |   |||   |    || || |  | ||  ||||| || || || || |||||||| || ||||||||||| |||||||| || |||||||||||||| || |||||||||||||| ||||||||||| ||||
gtatttatattaaattaatatagtggtatttattattgtttgtggtgtaaattctaaattttaaaccaggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC

upper sequence: GLYMA10G42940.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 7
aaagcaaaatttaaatgaggctttttgatttcctgacttgcatgaagtagctaatccctaaaatgttctcttgctaa-tgtgaatatgtgatttact-gcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC
||| |||  ||         | | ||  | |  |  || | |  |  |   |  |   |   || ||       ||| |  |||| | |  |   || |||||| |||||||| || |||||||| |||||||||||||| || || ||||||||||||||||| |  |||||||||||||| |||||||| || || || |
aaatcaatgttcttccattccctctt--tctttttcctcgaacaatttctgtggtaagtcttatatttagaatttaagttcgaatctctcttgggcttgcagGCTAATGATCCAACGATTGAACGGATTATCACTCCTCGAATCGCCCTTACTACTGCTGAATACTACGCTTATGAATGTGGGAAGCATGTCCTGGTCATCC

upper sequence: GLYMA10G42940.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 8
aaagcaaaatttaaatgaggctttttgatttc----ctgacttgcatgaagtagc-taatccctaaaatgttctcttgctaatgtgaatatgtgatttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC
    ||   ||  ||     || || | | ||       | || | | ||  ||        | || || |  | ||   | | ||||| | |  |    ||||||| |||||||| |||||||| ||||| ||||||||||| ||||| || ||||||||||||||||  |||||||| ||||| ||||||||  | || ||||
----catgtttccaaccct-ctcttcgttctcggtatcaaatttcgtaaatcagtgctggaacgaacatttcgtgttttaattttgaatttatactgatttgcagGCTAATGATCCAACAATTGAGCGTATCATCACTCCTCGAATTGCACTCACTACTGCTGAATATTATGCTTATGAGTGTGGGAAGCATGTGTTGGTCATAC

upper sequence: GLYMA10G42940.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 7
----------------------------------------------------------------------------------------------------------aaagcaaaatttaaatgaggctttttgatttcctgacttgcatgaagtagctaatccctaaaatgttctcttgctaatgtgaatatgtgatttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC
                                                                                                           |  |   |   |    |   |  |  | | | ||  ||   |        |||   ||  ||| || | ||   |  ||     || | |||    ||||| |||||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||||| || |  |||||||| ||||| ||||| ||||| || || |
gtatgtacatcttcagttttcttttatcgtcgattttcaccacatttttggattatatatggaacttcatccagtttcttttcgtaatggaagagtcgtctgttttgagacttcacaaagtcaattttcctccagtccttgcgtttttttcctggattaagttctggaattttattttaggatcgt---cttgggcttt----cagGCTAATGATCCAACAATTGAGCGTATTATCACACCTCGAATTGCACTTACAACTGCTGAGTACTACGCTTATGAGTGTGGAAAGCACGTTCTGGTCATCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533616|gb|EH261749.1|EH261749
EST:     ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTTCTTAAATTG                         TCCAATGATCCTACAATTGAACGTATTATCATTCCTCGTATTGCTCTTACT
genomic: ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGgtaacccttt ... tttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
EST: gi|19452473|gb|BM953883.1|BM953883
EST:     CAATGGAGAGAGTGACTCTTTTCCTTAATTTG                         GCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
genomic: CAATGGAGAGAGTGACTCTTTTCCTTAATTTGgtaacccttt ... tttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
EST: gi|16278890|gb|BI943147.1|BI943147
EST:     ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTG                         GCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
genomic: ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGgtaacccttt ... tttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
EST: gi|193355970|gb|FK322627.1|FK322627
EST:     ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTG                         GCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
genomic: ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGgtaacccttt ... tttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
EST: gi|16277797|gb|BI942567.1|BI942567
EST:     ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTG                         GCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTATAC
genomic: ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGgtaacccttt ... tttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCT-TAC
EST: gi|16283207|gb|BI945427.1|BI945427
EST:     ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTG                         GCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
genomic: ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGgtaacccttt ... tttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
EST: gi|193430619|gb|FK396393.1|FK396393
EST:     ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTG                         GCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
genomic: ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGgtaacccttt ... tttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
EST: gi|16278507|gb|BI942940.1|BI942940
EST:     ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTG                         GCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT
genomic: ACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGgtaacccttt ... tttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagctaatccctaaaatgttctcttgctaatgtgaatatgtgatttactgcagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC
                          tgctaat  putative branch site (score: 2)
             taaaatgtt  TA-rich tract