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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcactatctttctcagcatttaccccgaatttcttacttcatagatatgttttaaatagactcttgaattttgttcatttgcatttcagTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG

Basic information

species Glycine max
transcript GLYMA10G42180.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285661|gb|BI469552.1|BI469552
EST:     CTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAA                         TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
genomic: CTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAAgtaatcacta ... tgcatttcagTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
EST: gi|10709284|gb|BF009008.1|BF009008
EST:     CTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAA                         TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
genomic: CTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAAgtaatcacta ... tgcatttcagTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
EST: gi|12690109|gb|BG156445.1|BG156445
EST:     CTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAA                         TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
genomic: CTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAAgtaatcacta ... tgcatttcagTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
EST: gi|151401292|gb|EV271106.1|EV271106
EST:     CTGGTGCTGCTGGTGCTGGTTCATTAGGCTTTTTACGCAATAGTCAACAA                         TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
genomic: CTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAAgtaatcacta ... tgcatttcagTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
EST: gi|24205755|gb|BU965008.1|BU965008
EST:     CTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAA                         TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
genomic: CTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAAgtaatcacta ... tgcatttcagTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
EST: gi|15663984|gb|BI701355.1|BI701355
EST:     GCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAA                         TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
genomic: GCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAAgtaatcacta ... tgcatttcagTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttcatagatatgttttaaatagactcttgaattttgttcatttgcatttcagTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG
 ttcttac  putative branch site (score: 2)
                                       ttcattt  putative PPT
      atagatatgttttaaa  TA-rich tract