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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaccccaactgaagcaatatgtagtttctcttcttgttgccttacatgattacatctgttttgacctttgttttttgtgatttttcagTGATGTGAGAGGTAATAATTTGACTGGTACTATACCTGACAACATTGGGAACTGTACAAGTTTTGAAATCTT

Basic information

species Glycine max
transcript GLYMA10G38730.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38730.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 7
gtgagtaccccaactgaagcaatatgtagtttctcttcttgttgccttacatgat-tacatctgttttga-----cctttgttttttgtgatt--tttcagTGATGTGAGAGGTAATAATTTGACTGGTACTATACCTGACAACATTGGGAACTGTACAAGTTTTGAAATCTT
||||||      |||       ||||   | | |    | |||     |   ||| |   | | || |||     | ||| ||| ||   |||  |||||||||||| ||||| |||||| ||||||| || || ||||| | ||| || ||||||||||| ||||||||| |
gtgagtgatattacttccttgttatgctatctttgcattggtttttcaaatggatgtttgtttattgtgaaactgcatttatttgtttacattgttttcagTGATGTAAGAGGCAATAATCTGACTGGAACAATCCCTGATAGCATCGGTAACTGTACAAGCTTTGAAATCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgccttacatgattacatctgttttgacctttgttttttgtgatttttcagTGATGTGAGAGGTAATAATTTGACTGGTACTATACCTGACAACATTGGGAACTGTACAAGTTTTGAAATCTT
                         ttttgac  putative branch site (score: 3)
                                               tttttc  putative PPT
                                     ttttttgtgattttt  TA-rich tract