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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcctctatgaattcaactaatttggttccatctttttgctgggtaaacattattttttttatttttttgatcatcaaatcaattgctgcaggtgtactctatcaagCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAG

Basic information

species Glycine max
transcript GLYMA10G38370.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38370.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv16s0100g00480.t01 (Vitis vinifera), 3'ss of exon 8
gtatgtcctctatgaattcaactaatttggttccatctttttgctgggtaaacattattttttttatttttttgatcatcaaatcaattgctgcaggtgtactctatcaagCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAG
   | | || | ||| || | ||||||||  | |||||     ||    |   | ||   |  | || |  |  |  | |  |    | ||  ||||| |||||| |||| ||||| ||||||||||||  |||||||||||||||| |  |  | ||||||||||| || ||||| || |||
--gtctgctttctgagttta-ctaatttgtcttcatctagaaactattcagttagtagcataatgatctgatatacaagc--actgctggcctcagGTTTACTCTCTCAAACATGACATCACAGATGTGCGGTGTCTCATGCCAGGCCTAATCCTGGCCATTAGAAAGGTCGTGCGGCTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17518947|gb|BM187989.1|BM187989
EST:     TTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAG                         CATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATT
genomic: TTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAGgtatgtcctc ... ctctatcaagCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttttatttttttgatcatcaaatcaattgctgcaggtgtactctatcaagCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAG
             ttttgat  putative branch site (score: 4)
                                             ctctatc  putative PPT
     ttttatttttttgatc  TA-rich tract