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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcctctatgaattcaactaatttggttccatctttttgctgggtaaacattattttttttatttttttgatcatcaaatcaattgctgcagGTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAG

Basic information

species Glycine max
transcript GLYMA10G38370.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38370.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv16s0100g00480.t01 (Vitis vinifera), 3'ss of exon 8
gtatgtcctctatgaattcaactaatttggttccatctttttgctgggtaaacattattttttttatttttttgatcatcaaatcaattgctgcagGTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAG
   | | || | ||| || | ||||||||  | |||||     ||    |   | ||   |  | || |  |  |  | |  |    | ||  ||||| |||||| |||| ||||| ||||||||||||  |||||||||||||||| |  |  | ||||||||||| || ||||| || |||
--gtctgctttctgagttta-ctaatttgtcttcatctagaaactattcagttagtagcataatgatctgatatacaagc--actgctggcctcagGTTTACTCTCTCAAACATGACATCACAGATGTGCGGTGTCTCATGCCAGGCCTAATCCTGGCCATTAGAAAGGTCGTGCGGCTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13251720|gb|BG362623.1|BG362623
EST:     TTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAG                         GTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGC
genomic: TTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAGgtatgtcctc ... attgctgcagGTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGC
EST: gi|23052868|gb|BU577359.1|BU577359
EST:     TTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAG                         GTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGC
genomic: TTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAGgtatgtcctc ... attgctgcagGTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgggtaaacattattttttttatttttttgatcatcaaatcaattgctgcagGTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAG
                            ttttgat  putative branch site (score: 4)
       taaacattattttttt  TA-rich tract