1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagaaaaatagtatattttttgtttcattttcttcctttttctatgctgttttctgcatgttgatgtcaatattttattataatgttgtcttatttgcagGCCGTTAACGCCAACGATAGCAGCATGCTGATTCTGCAGGAAACATGGATGGACGCGTCGTGCTCAGTGGTGGTATATGCACCAGTTGACGTGCAATCAC
species | Glycine max |
transcript | GLYMA10G38280.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGCCAAAGGACAAGGACATGGAAACTGCGTTTCTCTTCTTCGTGCTAAT GCCGTTAACGCCAACGATAGCATG-ATGCTGATTCTGCACGAAACATGGATEST: gi|51335467|gb|CO979333.1|CO979333
genomic: TTGCCAAAGGACAAGGACATGGAAACTGCGTTTCTCTTCTTCGTGCTAATgtaagtagta ... ttatttgcagGCCGTTAACGCCAACGATAGCA-GCATGCTGATTCTGCAGGAAACATGGAT
EST: TTGCCAAAGGACAAGGACATGGAAACTGCGTTNNNNNTCTTCGTGCTAAT GCCGTTAACGCCAACGATAGCAGCATGCTGATTCTGCAGGAAACATGGATGEST: gi|208328914|gb|GE130926.1|GE130926
genomic: TTGCCAAAGGACAAGGACATGGAAACTGCGTTTCTCTTCTTCGTGCTAATgtaagtagta ... ttatttgcagGCCGTTAACGCCAACGATAGCAGCATGCTGATTCTGCAGGAAACATGGATG
EST: TTGCCAAAGGACAAGGACATGGAAACTGCGTTTCTCTTCTTCGTGCTAAT GCCGTTAAACGACCAACGATAGCA
genomic: TTGCCAAAGGACAAGGACATGGAAACTGCGTTTCTCTTCTTCGTGCTAATgtaagtagta ... ttatttgcagGCCGTTAA-CG-CCAACGATAGCA
gctgttttctgcatgttgatgtcaatattttattataatgttgtcttatttgcagGCCGTTAACGCCAACGATAGCAGCATGCTGATTCTGCAGGAAACATGGATGGACGCGTCGTGCTCAGTGGTGGTATATGCACCAGTTGACGTGCAATCAC
tgttgat putative branch site (score: 4)
tcttattt putative PPT
tcaatattttattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaaaaatagtatattttttgtttcattttcttcctttttctatgctgttttctgcatgttgatgtcaatattttattataatgttgtcttatttgcagGCCGTTAACGCCAACGATAGCAGCATGCTGATTCTGCAGGAAACATGGATGGACGCGTCGTGCTCAGTGGTGGTATATGCACCAGTTGACGTGCAATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -aaaaata
- - - - - - - - - - - - - - -ttcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc