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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggatatagttttatccatagaatgcaattcctatgaaaagcattatacattataatatacattattgttggtagGAACCTTTGTTGAATGGAGTTGCTCCTGGAGCACAATTAATATCTTGTAAAATTGGGGACTCTCGCTTAGGTTCAATGGAAACTGGAACTGGTTTGACTC

Basic information

species Glycine max
transcript GLYMA10G37900.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37900.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv16s0050g00510.t01 (Vitis vinifera), 3'ss of exon 1
-----------------------gtagggatatagttttatccatagaatgcaattcctatgaaaagcattatacattataatatacattattgttggtagGAACCTTTGTTGAATGGAGTTGCTCCTGGAGCACAATTAATATCTTGTAAAATTGGGGACTCTCGCTTAGGTTCAATGGAAACTGGAACTGGTTTGACTC
                       ||    | |||||| | | || | |||     ||   |    |   ||| | | |||  |  | | |||| |    |||| || ||||||||| |||||||  ||||||||||  | ||||||||||||||||| ||||| ||| |||||||||||||||| ||||| || |||||  
taaaattatttatttttatttttgtttaaaaatagttgttttcagaaaattattctctattttgtacttttaaaaactatttttaaaaatatt-tgtacagGAGCCATTGTTGAATAGAGTTGCAGCTGGAGCACAGATGATATCTTGTAAAATTGGAGACTCACGCCTAGGTTCAATGGAAACAGGAACAGGCTTGACCA

upper sequence: GLYMA10G37900.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 8
----------------gtagggatatagt----tttatccatagaat------gcaattcctatg---aaaagcattatacattataatatacattattgttg-gtagGAACCTTTGTTGAATGGAGTTGCTCCTGGAGCACAATTAATATCTTGTAAAATTGGGGACTCTCGCTTAGGTTCAATGGAAACTGGAACTGGTTTGACTC
                 |  | | ||||     | ||| | |  | |      ||| ||| | |     |||  | | ||| || | | |||    |||||||   ||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||| || || || |||||  
gtaatatgctattaacattcgaaaatagcatactctattcctgcattattcctgcatttcttttatacgaaacaaatttaccttttgaaatatgccattgttgtacagGAACCATTGTTGAATGGAGTTGCACCTGGAGCACAAATAATATCTTGTAAAATTGGAGACTCACGCCTAGGTTCAATGGAAACAGGGACAGGCTTGACCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgcaattcctatgaaaagcattatacattataatatacattattgttggtagGAACCTTTGTTGAATGGAGTTGCTCCTGGAGCACAATTAATATCTTGTAAAATTGGGGACTCTCGCTTAGGTTCAATGGAAACTGGAACTGGTTTGACTC
            tatgaaaagcattata  TA-rich tract