Sequence
atgc intronic sequence ATGC exonic sequence...gcatctggtttattgattttctaattctaaatgatttaattaatccaaaggttgcataatttgtcctgtttgccctacttataccctacataatttgcagATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAG
Basic information
species | Glycine max |
transcript | GLYMA10G37730.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 6
--gcatctggtttattgattttctaattctaaatgatttaattaatccaaaggttgcataatttgtcctgtttgccctacttatacc-ctacataatttgcagATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAG
| ||| || ||| || | || | | | ||| | | | || | | | | | ||| | || || || ||| | ||||| ||||||| || ||||| || |||| || ||||||||||||| ||| ||||||||||| ||||||
tagtttcttgtgtatcgaatatcaacctatgcttgaccttagtcat--gatgttcatgttaaa-atccagcttacctgacatatttcattacatgtcatgcagATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAG
upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S10_200V6.2 (Physcomitrella patens), 3'ss of exon 8
gcatctggtttattgattttctaattct-aaatgatttaattaatccaaaggttgcataatttgtcctgtttgccctacttataccctacataatt----tgcagATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAG
| ||| | | || | ||||| | || ||| || || || |||| | | | || ||| ||| ||||||| | | ||||| | ||| ||| |||||||||| ||||||||||||||||||||||
----gtatttttccagtccttggtttttgaaatgctgcttttcgattctctcttgt-tagaaggtactctttgttcctcatgtatcctgagacattgtgatgcagATTTCTGCTCAATCCTTTCTCCAGTCTTTCAAGGGAAGCCCTTACTGGATGGCTCCTGAG
upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S387_39V6.1 (Physcomitrella patens), 3'ss of exon 6
---gcatctggttt-attgattttctaattctaaatgatttaattaatccaaag-gttgcataatt-tgtcctgtttgccctacttataccctacataatttgcagATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAG
|| || || | ||| ||| | | | | | |||| || ||| | | || | || || || | | | ||||||| | | ||||| | ||| ||| |||||||||| |||||| |||||||||||||||
gttaagtcacgtaggataggccttcgtgttcctcac--tgtcagcagtccatgctgtcgcaagagtatggatctcacgtgctcctggcacgttgc----tctgcagATTTCTGCTCAATCTTTTCTCCAGTCTTTCAAGGGAAGCCCTTATTGGATGGCTCCTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaaggttgcataatttgtcctgtttgccctacttataccctacataatttgcagATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAG
tacataattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcatctggtttattgattttctaattctaaatgatttaattaatccaaaggttgcataatttgtcctgtttgccctacttataccctacataatttgcagATAACAGGGCAATCGTGTCTATTGTCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAG
gcatctg
- - - - - - - - - - - - - - - - - - - - - atccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctaca