1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggttgactgtaggcatatggattgaaattagcgtccttggatcctttttatcacggttttcatgtaacatgcattatttcataccccatgaatttggcagTTGCAAGAGGTGAAAAACCTACTTATCCATCCTCAAAACCGAAAATAACAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAG
species | Glycine max |
transcript | GLYMA10G37440.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAATTCAACAAGGGTAGCACAGTTGCACAGAGGTTTAGTGTTTTGCCAG TTGCAAGAGGTGAAAAACCTACTTATCCATCCTCAAAACCGAAAATAACAGEST: gi|13481891|gb|BG511234.1|BG511234
genomic: AGAATTCAACAAGGGTAGCACAGTTGCACAGAGGTTTAGTGTTTTGCCAGgtaacttaag ... aatttggcagTTGCAAGAGGTGAAAAACCTACTTATCCATCCTCAAAACCGAAAATAACAG
EST: AGAATTCAACAAGGGTAGCACAGTTGCACAGAGGTTTAGTGTTTTGCCAG TTGCAAGAGGTGAAAAACCTACTTATCCATCCTCAAAACCGAAAATAACAG
genomic: AGAATTCAACAAGGGTAGCACAGTTGCACAGAGGTTTAGTGTTTTGCCAGgtaacttaag ... aatttggcagTTGCAAGAGGTGAAAAACCTACTTATCCATCCTCAAAACCGAAAATAACAG
ttttatcacggttttcatgtaacatgcattatttcataccccatgaatttggcagTTGCAAGAGGTGAAAAACCTACTTATCCATCCTCAAAACCGAAAATAACAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAG
atgtaac putative branch site (score: 3)
attatttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttgactgtaggcatatggattgaaattagcgtccttggatcctttttatcacggttttcatgtaacatgcattatttcataccccatgaatttggcagTTGCAAGAGGTGAAAAACCTACTTATCCATCCTCAAAACCGAAAATAACAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- ttgactg
- - - - - - gcatatg
- - - - - - - - - - - - - - - - - ccttgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cataccc