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...gtttcattagtagcactgcatcttaatgacttggaagactaatctaaagcaaggttattcatgggatgtgaaaataataattacatttattataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGAAGCCACCATACCCGGTGGTCAGATGCCACCAAATATTGGTCAAGTATTC
species | Glycine max |
transcript | GLYMA10G37210.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAA GTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGAEST: gi|298196130|gb|HO044521.1|HO044521
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaata ... tataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
EST: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAA GTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGAEST: gi|151410647|gb|EV280462.1|EV280462
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaata ... tataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
EST: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAA GTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGAEST: gi|151411074|gb|EV280885.1|EV280885
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaata ... tataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
EST: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAA GTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaata ... tataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
aaagcaaggttattcatgggatgtgaaaataataattacatttattataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGAAGCCACCATACCCGGTGGTCAGATGCCACCAAATATTGGTCAAGTATTC
atctaaa putative branch site (score: 3)
atgtgaaaataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcattagtagcactgcatcttaatgacttggaagactaatctaaagcaaggttattcatgggatgtgaaaataataattacatttattataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGAAGCCACCATACCCGGTGGTCAGATGCCACCAAATATTGGTCAAGTATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - -cactgca
- - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - -aaagcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa