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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaccattttggtctgaattctaggttgtgaaaatgttgtgccagttttgataagttcaactgtgatgcacttgcacagGTTTTCCTTGGTCAAAATGGTATTCATAATATTGAAGGGAATGAGTTACCTCGTCTTGTCTATGTGTCACGTGAGAAAAGACCAGGATATGAACACCACA

Basic information

species Glycine max
transcript GLYMA10G36790.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36790.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------------------------gtgagtaccat---tttggtctgaattctaggttgtgaaaatgttgtgccagtttt-gataagttcaactgtgatgcacttgcacagGTTTTCCTTGGTCAAAATGGTATTCATAATATTGAAGGGAATGAGTTACCTCGTCTTGTCTATGTGTCACGTGAGAAAAGACCAGGATATGAACACCACA
                                                |||| | |||   | | |   ||  |      |    | || ||| | || |    |||   ||   || |  |   |||||||||||||| |||||||| |||||| ||| | || ||||||| |||||||| |||||||| || |||||||| |||||||| ||||| |||| ||| |||||||
gtgagggggtgatttctttcttcgagtgcattcatggatttttgtgcctgagcagcatgcatcttgctggaccttctacatactgagat-ttgagacattaaaagatttttttctctatttttgccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTCGTCTAGTTTATGTGTCTCGTGAGAAGAGACCGGGATTTGATCACCACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297356|gb|FG990662.1|FG990662
EST:     GGACTCCGTGGCCCGGGAACAGTGTCAGAGATCATCCTGGAATGATTCAG                         GTTTTCCTTGGTCAAAATGGTATTCATAATATTGAAGGGAATGAGTTACCT
genomic: GGACTCCGTGGCCCGGGAACAGTGTCAGAGATCATCCTGGAATGATTCAGgtgagtacca ... acttgcacagGTTTTCCTTGGTCAAAATGGTATTCATAATATTGAAGGGAATGAGTTACCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtgaaaatgttgtgccagttttgataagttcaactgtgatgcacttgcacagGTTTTCCTTGGTCAAAATGGTATTCATAATATTGAAGGGAATGAGTTACCTCGTCTTGTCTATGTGTCACGTGAGAAAAGACCAGGATATGAACACCACA
                     ttttgat  putative branch site (score: 4)
                     ttttgataa  TA-rich tract