1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctagtaactaggcggtaaggaagcattgttacaaccaaatttagtaccctgcccagcttaatttgtttgaactgaaaatggtaaaattgattcctgatagGTGCGGTAACTGGAGCAGTTACAACTCCTCTTGATGTAGTAAAGACCAGATTGATGGTTCAG
species | Glycine max |
transcript | GLYMA10G36580.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCCAGAGAATGCTATGCTTGGGGCAGTGGCTG GTGCGGTAACTGGAGCAGTTACAACTCCTCTTGAEST: gi|12689523|gb|BG155859.1|BG155859
genomic: ATCCAGAGAATGCTATGCTTGGGGCAGTGGCTGgtactacaga ... ttcctgatagGTGCGGTAACTGGAGCAGTTACAACTCCTCTTGA
EST: AAAAAGAGATCCTAATGATCCAGAGAATGCTATGCTTGGGGCAGTGGCTG GTGCGGTAACTGGAGCAGTTACAACTCCTCTTGATGTAGTAAAGACCAGAT
genomic: AAAAAGAGATCCTAATGATCCAGAGAATGCTATGCTTGGGGCAGTGGCTGgtactacaga ... ttcctgatagGTGCGGTAACTGGAGCAGTTACAACTCCTCTTGATGTAGTAAAGACCAGAT
accctgcccagcttaatttgtttgaactgaaaatggtaaaattgattcctgatagGTGCGGTAACTGGAGCAGTTACAACTCCTCTTGATGTAGTAAAGACCAGATTGATGGTTCAG
aattgat putative branch site (score: 4)
ttcct CT-rich tract
ttaatttgtttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagtaactaggcggtaaggaagcattgttacaaccaaatttagtaccctgcccagcttaatttgtttgaactgaaaatggtaaaattgattcctgatagGTGCGGTAACTGGAGCAGTTACAACTCCTCTTGATGTAGTAAAGACCAGATTGATGGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC