1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaagcttattttctcttcacttctgctgagctgtctacagcttctattttttatgtttatatttttaaaataaagcatctaactttatttattaaaacagCATTGCCCCTCCATGTCATCAGCAAATTCTCAGTTACTGAGTAAAGGTGATAAATCTTCTAAAGTTATTGAGGATTTAAATTGGGCCAAGAGAGCTAATA
species | Glycine max |
transcript | GLYMA10G36350.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGCATTCTGTACATGTTGGAAACTCAACTGTAGGACAT-ATATTCAAATG CA-TGGCCCTCCATGTCATCAGCAAATTCTCAGTTACTGAGTAAAGGTGATEST: gi|16348303|gb|BI973898.1|BI973898
genomic: AGCATTCTGTACATGTTGGAAACTCAACTGTAGGACATAATATTCAAATGgttcgtccag ... attaaaacagCATTGCCCCTCCATGTCATCAGCAAATTCTCAGTTACTGAGTAAAGGTGAT
EST: AGCATTCTGTACATGTTGGAAACTCAACTGTAGGACATAATATTCAAATG CATTGCCCCTCCATGTCATCAGCAAATTCTCAGTTACTGAGTAAAGGTGAT
genomic: AGCATTCTGTACATGTTGGAAACTCAACTGTAGGACATAATATTCAAATGgttcgtccag ... attaaaacagCATTGCCCCTCCATGTCATCAGCAAATTCTCAGTTACTGAGTAAAGGTGAT
attttttatgtttatatttttaaaataaagcatctaactttatttattaaaacagCATTGCCCCTCCATGTCATCAGCAAATTCTCAGTTACTGAGTAAAGGTGATAAATCTTCTAAAGTTATTGAGGATTTAAATTGGGCCAAGAGAGCTAATA
atctaac putative branch site (score: 2)
tttatatttttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagcttattttctcttcacttctgctgagctgtctacagcttctattttttatgtttatatttttaaaataaagcatctaactttatttattaaaacagCATTGCCCCTCCATGTCATCAGCAAATTCTCAGTTACTGAGTAAAGGTGATAAATCTTCTAAAGTTATTGAGGATTTAAATTGGGCCAAGAGAGCTAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - ctcttca
- - - - - - - - - -cttctgc
- - - - - - - - - - - - - - -gctgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa