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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaataccagatactgctgcgctcttctttctgtcactaagttactactttaccaatctaagcttaaccgtgcattttggtacttgcagTCCAACCATATGGTTCTTTGCTGTGCTAATTCTGCTCACAAATACTCATG

Basic information

species Glycine max
transcript GLYMA10G35640.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6133875|gb|AW132268.1|AW132268
EST:     ATATCAAGAGAACCCCTNGATGAGGATTTTGCAGCTGTGGTGGGCATAAC                         TCCAACCATATGGTTCTTTGCTGTGCTAATTCTGCTCACAAATACTCATG
genomic: ATATCAAGAGAACACTT-GATGAGGATTTTGCAGCTGTGGTGGGCATAACgtaagaatac ... gtacttgcagTCCAACCATATGGTTCTTTGCTGTGCTAATTCTGCTCACAAATACTCATG
EST: gi|6133871|gb|AW132264.1|AW132264
EST:     TATATCAAGAGAACACTTGA-GAGGATTTTG-AGCTGTGGTGGGCATAAC                         TCCAACCATATGGTTCTTTGCTGTGCTAATTCTGCTCACAAATACTCATG
genomic: TATATCAAGAGAACACTTGATGAGGATTTTGCAGCTGTGGTGGGCATAACgtaagaatac ... gtacttgcagTCCAACCATATGGTTCTTTGCTGTGCTAATTCTGCTCACAAATACTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactaagttactactttaccaatctaagcttaaccgtgcattttggtacttgcagTCCAACCATATGGTTCTTTGCTGTGCTAATTCTGCTCACAAATACTCATG
                           gcttaac  putative branch site (score: 3)
           tacttta  TA-rich tract