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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctcagttctcattctaacaccacataatttttatttgtattattcagatttttcatgaacttttccacatagaatgaagttgacattgttatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTG

Basic information

species Glycine max
transcript GLYMA10G35560.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35560.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g02960.t01 (Vitis vinifera), 3'ss of exon 8
tctcagttctcattc-taacaccacataatttttatttgtattattcagatttttcatgaacttttccacatagaatgaagttgacattgttatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTG
  | ||    || |   ||| |    |   | |   |       |||| ||||||  | || |  |||||  || ||||  || |  |  ||   | |||||| || ||||||||||| ||  | |||||||||||| |||| || | |||||| |||||| |||||||| | |  |||||| ||||||| ||||| ||||
-gtaagcctccacttacaactctctcttcctctctctcccccctttcaaattttt--ttaagtaatccac--aggatga--ttaatctcatttcatttcagGGACTTGGTTCACCAGTTTTCAATAAACTTGAAGCTCAACTGGCCAGAGCTGCCATGTCACTGCCTGCATCGATAGGCTTTGAGTTTGGCAGTGGCTTTG

upper sequence: GLYMA10G35560.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g04190.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------------------------------tctcagttctcattctaacaccacataatttttat----ttgtattattcaga------tttttcatgaacttt--tccacatagaatgaagttgacattgttatt---tctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTG
                                                           |  | |   | | |  | | | ||| |          |  ||| |||      ||  |  |||| | |  |   || | ||     || | ||  |||||   |  ||||| || || |||||||| ||||| ||||||||||||||  | |||||||||||| ||||||| |||||||| ||||||||| | ||||| ||||| ||||
gtgagaactctctctctctctctctctctctcacacacacacacacacacacacaaagatgttgaaaattatagaagacagtttcttaagtaccacaaaattaagaaaatacttggttgtgaattgtgatttgca-aaaacattcttcaaatgattattggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276418|gb|BI941848.1|BI941848
EST:     GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGT                         GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
genomic: GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTgtaagtcctc ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
EST: gi|16276792|gb|BI942046.1|BI942046
EST:     GATTCTGTGGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGT                         GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
genomic: GATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTgtaagtcctc ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
EST: gi|120532705|gb|EH260838.1|EH260838
EST:     GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGT                         GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
genomic: GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTgtaagtcctc ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
EST: gi|10843361|gb|BF066663.1|BF066663
EST:     GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGA                         GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCT
genomic: GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTgtaagtcctc ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
EST: gi|33387796|gb|CA851003.1|CA851003
EST:     GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGT                         GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
genomic: GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTgtaagtcctc ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
EST: gi|16277466|gb|BI942396.1|BI942396
EST:     TGTAACATGCATTGTGAGGAACTGTCCACGT                         GGTCTCGGATCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
genomic: TGTAACATGCATTGTGAGGAACTGTCCACGTgtaagtcctc ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
EST: gi|19053065|gb|BM731732.1|BM731732
EST:     GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGA                         GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCT
genomic: GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTgtaagtcctc ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
EST: gi|19268860|gb|BM885116.1|BM885116
EST:     ACATGCATTGTGAGGAACTGTCCACGA                         GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCT
genomic: ACATGCATTGTGAGGAACTGTCCACGTgtaagtcctc ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
EST: gi|16282970|gb|BI945300.1|BI945300
EST:     GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGAAACTGTCCACGT                         GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
genomic: GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTgtaagtcctc ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
EST: gi|208201922|gb|GD997013.1|GD997013
EST:     GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGT                         GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT
genomic: GTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTgtaagtcctc ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagatttttcatgaacttttccacatagaatgaagttgacattgttatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTG
                                 agttgac  putative branch site (score: 4)
                                            ttatttctc  putative PPT
                                        attgttattt  TA-rich tract