Sequence
atgc intronic sequence ATGC exonic sequencegttgatttcctgaatgtttttatcttgtttgctaacctttattgcattaattatccacagagaaaccattggagggtttccatatagTTGTTGATGCAGGCAATGGAGCAGGAGGCTTTTTTGCA
Basic information
species | Glycine max |
transcript | GLYMA10G35490.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G35490.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 3'ss of exon 7
---------------------------------------gttgatt-tcctgaatgtttttatcttgtttgctaacctttattgcattaattatccacagagaaaccattggagggtttccatatagTTGTTGATGCAGGCAATGGAGCAGGAGGCTTTTTTGCA
| ||| | | || | | | | | | | | | | | | | ||| |||||| ||||||| | || ||||| || |||||||| ||||||||||| ||||||||||
gttgaaatggttgagaaaacgattgtgaaatggttaaatataaattatgataaagataagaaaactcctggttcttatgtctgttctcatatggtcttagAAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGGTGGCTTTTTTGTG
upper sequence: GLYMA10G35490.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G17530.3 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------------------------------------gttgatttcctgaatgtttttatcttgtttgctaacctt----tattgcattaattatccacagagaaaccattggagggtttccatatagTTGTTGATGCAGGCAATGGAGCAGGAGGCTTTTTTGCA
||| | || | | | || | | | ||| ||| || || | || | |||||| || | ||||| || ||||||||||||||||| || |||||||| ||||| ||||||||
gtattactcctttgagatatttcttttttcaggaatcttagcataatcaagaaagttctgaacttctatttatctgctgctaatatatcgagcttaatgtatggcgtttctgattcttagAGAAGCCTCTAGAGGGATTTCATATAGTTGTTGATGCTGGAAATGGAGCTGGAGGATTTTTTGCT
upper sequence: GLYMA10G35490.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------gttgatttcctgaatgtttttatcttgtttgctaacctttattg-cattaattatccacagagaaaccattggagggtttccatatagTTGTTGATGCAGGCAATGGAGCAGGAGGCTTTTTTGCA
| | ||| | | || | | ||| ||||||||| | ||| |||| |||| | |||||| ||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||
cccctttttttaccagtacttattttatactatttatggggtatgttcttaagtggtctgatccagtttgctaatttcacttggtattatttattctcagAGAGGCCATTGGAGGGGTTGCATATAGTTGTTGATGCAGGGAATGGAGCAGGAGGATTTTTTGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taacctttattgcattaattatccacagagaaaccattggagggtttccatatagTTGTTGATGCAGGCAATGGAGCAGGAGGCTTTTTTGCA
tttccat CT-rich tract
tttattgcattaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgatttcctgaatgtttttatcttgtttgctaacctttattgcattaattatccacagagaaaccattggagggtttccatatagTTGTTGATGCAGGCAATGGAGCAGGAGGCTTTTTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG