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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttatacctgtagtcactgttgcgtttagtttcatcttaatatgttcaccatttgttatatcatttattgtgcagGCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACG

Basic information

species Glycine max
transcript GLYMA10G35320.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35320.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 3'ss of exon 8
gtaagatttatacctgtagtcactgttgcgtttagtttcatcttaatatgttcaccatttgttatatcatt----tattgtgcagGCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACG
||||| || ||   | | |     ||  | | |  | |  ||| || |   |||| |     ||||   ||     ||| || ||||||| ||||| |||  ||| |||||||| ||| |||||||||| || || || ||||| || || || || ||||||||||| || |||||||| |||
gtaagtttgatttgtatggagctggtaccctatgatgt--tctaaaaactgtcactaaccaatatacttttgcttcattatgtagGCTGACAAATTAGAGCGACTAAGGGAGAGAATGGTAAAAGTGCGGGAGCTTTTCCGTGACACAGACTCGACAGAATTTGTCATAGTAACAATCCCTACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258515|gb|BE346662.1|BE346662
EST:     CCTCAGCAATTAAATCCGTATTTGGGCAAGAAGAAACCCGACAGAATGCT                         GCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTC
genomic: CCTCAGCAATTAAATCCGTATTTGGGCAAGAAGAAACCCGACAGAATGCTgtaagattta ... tattgtgcagGCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTC
EST: gi|7796764|gb|AW782158.1|AW782158
EST:     CCTCAGCAATTAAATCCGTATTTGGGCAAGAAGAAACCCGACAGAATGCT                         GCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTC
genomic: CCTCAGCAATTAAATCCGTATTTGGGCAAGAAGAAACCCGACAGAATGCTgtaagattta ... tattgtgcagGCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTC
EST: gi|9903231|gb|BE612199.1|BE612199
EST:     GAAGAAACCCGACAGAATGCT                         GCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTC
genomic: GAAGAAACCCGACAGAATGCTgtaagattta ... tattgtgcagGCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgtttagtttcatcttaatatgttcaccatttgttatatcatttattgtgcagGCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACG
              tcttaat  putative branch site (score: 3)
                              atttgttatatcattt  TA-rich tract