Sequence
atgc intronic sequence ATGC exonic sequence...tgttatatcaattttagtcccacatgtcatttctcttgcatttctaaagtacttttacactgtgagcaaagaaagatgttttgtacttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 8
lower sequence: AT2G39130.1 (Arabidopsis thaliana), 3'ss of exon 8
-------tgttatatcaattttagtcccac-atgtcatttctcttgcatttcta----aagtacttttacactgtgagcaaagaaagatgttttgt-acttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG
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gtaagtggaccaaatatgttttctttccactacgtattggttcttgcatgttggttggaagtaaaaccgttttgttttaaccgtttcacagGTGGTCAATCCATT--TACCAAATATGCTTTGACCATATCTCCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATCAGGTCACATTGGTACG--------------------
upper sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 8
lower sequence: AT3G54830.1 (Arabidopsis thaliana), 3'ss of exon 8
tgttatatcaattttagtcccacatgtcatttctcttgcatttctaaagtacttttacactgtgagcaaagaaagatgtt-ttgtacttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG-----------------------
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-------------------------gtaattt--------tgtcataagcttattcataatataaactgaaaattgtgtggccttaatagaaagaaagcacatatgctttgacattatctccagTTGCAATGAGTCTTGAGGAGTTAATACCATCAAACTATGGGAAGTCACGTTTCTACGCAATCGCCATTAGAAGTGCATTAGCCATCTCTACTCTGCTCGT
upper sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g04660.t01 (Vitis vinifera), 3'ss of exon 10
--------tgttatatcaattttagtcccacatgtcatttctcttgcatttctaaagtacttttacactgtgagcaaagaaagatgttttgtacttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG
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cagatgaagagtaaagcatttgagctctttcatttttttctttttttctttttttactttttttaaa----gaagaagaacagaaaatttttccttaattagagCCACATATGCATTAACCATGTCTCCAGTAGCAATGAGTCTGGAAGAGTTGATCCCTTCAAACCAATCCAAATCTCACATGTATGCAATCCTCATTAGAAC----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151408183|gb|EV277991.1|EV277991EST: CTACGGTGGTTAATCCATTTACCAA GTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
genomic: CTACGGTGGTTAATCCATTTACCAAatatccttta ... ctagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagtacttttacactgtgagcaaagaaagatgttttgtacttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG
gtacttaac putative branch site
actttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttatatcaattttagtcccacatgtcatttctcttgcatttctaaagtacttttacactgtgagcaaagaaagatgttttgtacttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG
- - - - - - - - - - -acatgtc
- - - - - - - - - - - - - - - - - - -gcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg