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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcagtttccttgttatcttcaatgtccataggttgtttgaagaagtcaagttatattagtatccattttctcttctaattccttttttaccataccatgcagAAAGTCTCCATGTGGAAGAAGTTATATGTGATTTATAGTTTCTTCTTTGTCCGGAAAATTGTTGCTCATGTGGTCACATTTGTATTCTACTGTGTGATTA

Basic information

species Glycine max
transcript GLYMA10G34550.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320924|gb|GR827373.1|GR827373
EST:     GCCCAGCTAATCTTTTCAAGAAAATGGCAATGGAAATAATGAGAAACAAG                         AAAGTCTCCATGTGGAAGAAGTTATATGTGATTTATAGTTTCTTCTTTGTC
genomic: GCCCAGCTAATCTTTTCAAGAAAATGGCAATGGAAATAATGAGAAACAAGgtatcagttt ... taccatgcagAAAGTCTCCATGTGGAAGAAGTTATATGTGATTTATAGTTTCTTCTTTGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttatattagtatccattttctcttctaattccttttttaccataccatgcagAAAGTCTCCATGTGGAAGAAGTTATATGTGATTTATAGTTTCTTCTTTGTCCGGAAAATTGTTGCTCATGTGGTCACATTTGTATTCTACTGTGTGATTA
                         ttctaat  putative branch site (score: 2)
 ttttctcttctaattc  CT-rich tract
 taattcctttttta  TA-rich tract