Sequence
atgc intronic sequence ATGC exonic sequence...cactagttagctaccatttatctgttcttttatctcatgttgaaaatgaatcaatgcatgtgctatttaattttgcttcatttttttctcccttatgcagGCACTCATTGATAAAGACTGGCTTGCTTTCGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAATGTGCCTTTCGAGTTAT
Basic information
species | Glycine max |
transcript | GLYMA10G34510.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34510.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G04540.1 (Arabidopsis thaliana), 3'ss of exon 14
cactagttagctaccatttatctgttcttttatctcatgttgaaaatgaatc-aatgca----tgtgctatttaattttgcttcatttttttctcccttatgcagGCACTCATTGATAAAGACTGGCTTGCTTTCGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAATGT-GCCTTTCGAGTTAT
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--cttgccagctg--attcaactgcataagcagcccttataagatttttgtttgatgcaccattgtcttatgtagtctttcctactgttctgacttcacat-cagGCTCTTGTCGAAAAGGATTGGTTATCATTTGGTCACCCATTTTCGGATCGGGTGGGAATGCCAAACGTGTCTGAATCTGGTAATTTTGAATTACCAATTC-
upper sequence: GLYMA10G34510.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0074g00300.t01 (Vitis vinifera), 3'ss of exon 14
cactagttagctaccatttatctgttcttttatctcat-gttgaaaatgaatcaatgcatgtgctatttaattttgcttcatttttttctcccttatgcagGCACTCATTGATAAAGACTGGCTTGCTTTCGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAATGTGCCTTTCGAGTTAT
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atctaagctgacatgaagtgtcc-ttactgcatatgattacttcacaggcacttatttggatatcacctttatattttaaagtgttttatttttcatgtagGCACTTGTTGAAAAAGACTGGCTTGCATTTGGTCATCCATTTTCAGATCGCATGGGGATGCCAACTGTATCTGGAAGTGTTAACATGCCCTTTGAATTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgaatcaatgcatgtgctatttaattttgcttcatttttttctcccttatgcagGCACTCATTGATAAAGACTGGCTTGCTTTCGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAATGTGCCTTTCGAGTTAT
atttaat putative branch site (score: 4)
tttaattttgcttcat CT-rich tract
tatttaattttgcttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cactagttagctaccatttatctgttcttttatctcatgttgaaaatgaatcaatgcatgtgctatttaattttgcttcatttttttctcccttatgcagGCACTCATTGATAAAGACTGGCTTGCTTTCGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAATGTGCCTTTCGAGTTAT
- - - - - - -ccattta
- - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - aaaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt