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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcattgaaggatcattaccagaataatgtgcatgaactgaatttctttaactctcttttatgatattaatctggtgttacctgttatcttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTGGTTAAGGATCAGAAGTGGTTGGAGGAAGAGTTCACTGAAAAGGTTCAAA

Basic information

species Glycine max
transcript GLYMA10G34150.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15338126|gb|BI498782.1|BI498782
EST:     ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG                         GTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|10236029|gb|BE804977.1|BE804977
EST:     ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG                         GTCCCCGACTTCTTAAATGTTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|254344943|gb|GR851426.1|GR851426
EST:     ATGATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAG                         GTCCCTGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|151403877|gb|EV273687.1|EV273687
EST:     ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG                         GTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|27426251|gb|CA937771.1|CA937771
EST:     ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG                         GTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|193519235|gb|FK475000.1|FK475000
EST:     ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG                         GTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAGgtcattgaag ... ttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttaactctcttttatgatattaatctggtgttacctgttatcttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTGGTTAAGGATCAGAAGTGGTTGGAGGAAGAGTTCACTGAAAAGGTTCAAA
                    tattaat  putative branch site (score: 2)
 ttatctt  putative PPT
 tcttttatgatattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcattgaaggatcattaccagaataatgtgcatgaactgaatttctttaactctcttttatgatattaatctggtgttacctgttatcttgttaatagGTCCCCGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTGGTTAAGGATCAGAAGTGGTTGGAGGAAGAGTTCACTGAAAAGGTTCAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA