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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatctctctctattgtaagatatcggtgaatgaattcaataatttgagtgacacaaatctaaagcatcctcctcctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG

Basic information

species Glycine max
transcript GLYMA10G31310.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193650755|gb|FK595878.1|FK595878
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GC-TTGGATAAGTTC-TTCAGAATG-TTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|9898819|gb|BE607787.1|BE607787
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|208083199|gb|GD879229.1|GD879229
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|193472093|gb|FK437096.1|FK437096
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATG-TTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|208087721|gb|GD888581.1|GD888581
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|23731912|gb|BU764103.1|BU764103
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|208119461|gb|GD917394.1|GD917394
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaattcaataatttgagtgacacaaatctaaagcatcctcctcctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
                           atctaaa  putative branch site (score: 3)
                                   catcctcctccttttt  CT-rich tract
     ttcaataattt  TA-rich tract