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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatatgtgaattaattagttcgtattagataactattgcactttgtggacaatgtgctaattagcaagagactgatgatagtgtctgtttaattccagAATGAGAGTTGTTCTCCACCACCAAATATCAGCAAGTGATGTGCAATATGCATTGTCGTGCTTTCAGGTGATGATGACTACAAATCAACTAAACTCTTTT

Basic information

species Glycine max
transcript GLYMA10G30880.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30880.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0036g00520.t01 (Vitis vinifera), 3'ss of exon 9
tatatatgtgaattaattagttcgtattagataactattgcactttgtg-gacaatgtgctaatt--agcaagagactgatgatagtgtctgtttaattccagAATGAGAGTTGTTCTCCACCACCAAATATCAGCAAGTGATGTGCAATATGCATTGTCGTGCTTTCAGGTGATGATGACTACAAATCAACTAAACTCTTTT
   || ||  | || |||  ||  ||||    |||  |     ||| || |  |||     |  |  | || || ||||||  | ||  ||  ||| |  ||| || |||||||| ||||||||||||||||||| || ||||||||| ||| ||||||| ||| |||||                                 
gcaatgtgatattttatt--tttctattgatcaaccttcaagatttatgaggtaataaaaaatcttgaacatgaaactgatattggtaacttgtta-tctcagGATTAGAGTTGTGCTCCACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590892|gb|AW706635.1|AW706635
EST:     AAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAAG                         AATGAGAGTTGTTCTCCACCACCAAATATCAGCAAGTGATGTGCAATATGC
genomic: AAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAAGgtcttgtttt ... ttaattccagAATGAGAGTTGTTCTCCACCACCAAATATCAGCAAGTGATGTGCAATATGC
EST: gi|14258404|gb|BG881312.1|BG881312
EST:     AAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAAG                         AATGAGAGTTGTTCTCCACCACCAAATATCAGNAAGTGATGTGCAATATGC
genomic: AAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAAGgtcttgtttt ... ttaattccagAATGAGAGTTGTTCTCCACCACCAAATATCAGCAAGTGATGTGCAATATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtggacaatgtgctaattagcaagagactgatgatagtgtctgtttaattccagAATGAGAGTTGTTCTCCACCACCAAATATCAGCAAGTGATGTGCAATATGCATTGTCGTGCTTTCAGGTGATGATGACTACAAATCAACTAAACTCTTTT
                                        tctgttt  CT-rich tract
                                          tgtttaatt  TA-rich tract